TSPAN17

General Information

Gene Name       : TSPAN17
Gene ID             : ENSG00000048140.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSPAN17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSPAN17ENSG00000048140.174.818.036.42ENCSR000AEF
HepG2TSPAN17ENSG00000048140.1712.119.6010.86ENCSR985KAT
K562TSPAN17ENSG00000048140.1737.4933.5635.53ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSPAN17 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSPAN17 RNA is bound by 13 proteins.  







eCLIP assay for TSPAN17 is not avaliable on ENCORE database.





13 proteins are bound to TSPAN17 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5176085631176085700+3'-UTR3.717703.95400K562UPF1
chr5176085128176085223+3'-UTR4.311514.98530K562DROSHA
chr5176083020176083104+3'-UTR,CDS,intron-Proximal3.937686.86590K562SF3B4
chr5176084562176084624+3'-UTR,CDS4.159763.48187K562RBM15
chr5176084420176084484+3'-UTR,intron-Proximal3.549463.92069K562LSM11
chr5176085046176085179+3'-UTR4.4127110.38393K562UPF1
chr5176085092176085231+3'-UTR4.453314.44583HepG2UPF1
chr5176079817176079881+3'-UTR,CDS3.795593.46958K562YBX3
chr5176083770176083878+3'-UTR,CDS,intron-Proximal3.154266.93483HepG2PRPF8
chr5176074542176074631+5'-UTR,CDS5.295738.81962K562DDX3X
chr5176074542176074630+5'-UTR,CDS5.219689.60748HepG2DDX3X
chr5176074653176074703+CDS3.435653.49944K562FTO
chr5176074631176074687+CDS4.426095.47892K562DDX3X
chr5176080772176080889+intron-Distal3.368985.80260K562HNRNPL
chr5176081070176081155+intron-Distal3.796406.76440K562GTF2F1
chr5176083585176083658+intron-Distal,intron-Proximal4.550813.37579K562EFTUD2
chr5176081408176081483+intron-Distal3.889345.79294K562GTF2F1
chr5176080561176080661+intron-Distal3.996874.26070K562HNRNPL
chr5176080628176080650+intron-Distal3.322225.10278K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSPAN17 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSPAN17 is not available on ENCORE database.

  • 104 RBPs can affect the levels of TSPAN17.  








The Knockdown/knockout RNA-Seq assay for TSPAN17 is not available on ENCORE database.





104 RBPs can affect the gene expression of TSPAN17 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSPAN17ENSG00000048140.13661.32020382.671000.7891012.0101010.93440HepG2ACO1
TSPAN17ENSG00000048140.131400.93360564.169501.3121019.0081017.74290HepG2AKAP1
TSPAN17ENSG00000048140.13551.35660364.351300.597603.354102.21560HepG2AKAP8
TSPAN17ENSG00000048140.13480.01280384.481400.320102.059601.38490HepG2AKAP8L
TSPAN17ENSG00000048140.13892.62870579.177000.624008.603207.50510HepG2AUH
TSPAN17ENSG00000048140.13706.63600443.483400.672005.654104.57280HepG2CIRBP
TSPAN17ENSG00000048140.13594.62190396.652400.584005.741704.87970HepG2CELF1
TSPAN17ENSG00000048140.13578.79140353.922800.709509.942408.55100HepG2DDX19B
TSPAN17ENSG00000048140.13472.79380257.276900.877808.036006.94180HepG2DDX21
TSPAN17ENSG00000048140.13982.87620540.392300.862909.295608.20710HepG2DDX3X
TSPAN17ENSG00000048140.13778.40560413.052800.914108.022806.78580HepG2DDX55
TSPAN17ENSG00000048140.13841.14740464.300800.857207.911106.91870HepG2DDX6
TSPAN17ENSG00000048140.13336.31570246.567700.447702.594301.90880HepG2DNAJC21
TSPAN17ENSG00000048140.13584.45730446.251700.389101.992501.47960HepG2EIF2S1
TSPAN17ENSG00000048140.13319.11900228.137900.484102.356701.51580HepG2EIF3D
TSPAN17ENSG00000048140.13819.64110493.116100.733006.063205.12060HepG2EIF4A3
TSPAN17ENSG00000048140.131177.19690665.014200.8238016.3459015.08300HepG2ETF1
TSPAN17ENSG00000048140.13562.73570373.951300.589504.947503.83340HepG2EWSR1
TSPAN17ENSG00000048140.13722.32260381.552800.920707.617306.40580HepG2FIP1L1
TSPAN17ENSG00000048140.13480.51820264.967200.858705.680004.11990HepG2FUS
TSPAN17ENSG00000048140.13173.58060461.58930-1.4110015.1010013.60790HepG2G3BP1
TSPAN17ENSG00000048140.13385.39350253.125600.606402.845301.71630HepG2GRSF1
TSPAN17ENSG00000048140.13380.23800248.929600.611103.802203.06230HepG2HNRNPA1
TSPAN17ENSG00000048140.13468.34670276.881000.758205.819604.84270HepG2HNRNPC
TSPAN17ENSG00000048140.13264.44700388.59060-0.555304.583503.73340HepG2HNRNPL
TSPAN17ENSG00000048140.13395.72670263.182100.588303.684202.59940HepG2HNRNPM
TSPAN17ENSG00000048140.13601.31720396.584200.600403.241601.90730HepG2HSPD1
TSPAN17ENSG00000048140.13799.96350469.170300.769707.522606.46550HepG2IGF2BP2
TSPAN17ENSG00000048140.13662.46230480.840800.462202.471801.68880HepG2LARP4
TSPAN17ENSG00000048140.13444.25720298.231200.574903.559002.27080HepG2LARP7
TSPAN17ENSG00000048140.13411.74090238.777900.786003.820102.58970HepG2METAP2
TSPAN17ENSG00000048140.13545.44150308.688000.821207.545406.27240HepG2MSI2
TSPAN17ENSG00000048140.13806.14330512.381200.653705.301804.43910HepG2NCBP2
TSPAN17ENSG00000048140.13356.64580272.262400.389402.247501.47630HepG2PARN
TSPAN17ENSG00000048140.13581.23890444.825400.385802.896602.27950HepG2PCBP1
TSPAN17ENSG00000048140.13376.33430250.810900.585302.730801.69720HepG2PCBP2
TSPAN17ENSG00000048140.13620.40750452.587000.454903.881203.25750HepG2PTBP1
TSPAN17ENSG00000048140.13529.23870403.751800.390302.170801.63410HepG2PUF60
TSPAN17ENSG00000048140.13677.78730428.578200.661209.131908.18700HepG2PUM1
TSPAN17ENSG00000048140.13582.32710428.278900.443202.681702.02130HepG2PUM2
TSPAN17ENSG00000048140.13550.15910413.373100.412302.742201.88830HepG2RBM15
TSPAN17ENSG00000048140.13938.10620555.820200.7550011.5819010.67500HepG2RBM22
TSPAN17ENSG00000048140.13661.83770503.718700.393802.916802.36330HepG2NELFE
TSPAN17ENSG00000048140.13900.08720570.550900.657605.317204.41110HepG2RPLP0
TSPAN17ENSG00000048140.13351.58830237.803900.564002.426001.54100HepG2RPS10
TSPAN17ENSG00000048140.13452.71370221.974001.0281010.553309.44760HepG2RPS19
TSPAN17ENSG00000048140.13588.65960331.655000.827703.063902.22230HepG2RPS2
TSPAN17ENSG00000048140.13386.80570274.667100.493802.170001.46150HepG2RPS3A
TSPAN17ENSG00000048140.13552.85070338.567300.707305.046503.58240HepG2RPS5
TSPAN17ENSG00000048140.13435.67110315.165600.467002.144501.44470HepG2RRP9
TSPAN17ENSG00000048140.13319.79520222.808100.521202.492201.59760HepG2SERBP1
TSPAN17ENSG00000048140.13562.47840384.606700.548303.066602.35670HepG2SF3A3
TSPAN17ENSG00000048140.13401.21320297.779300.430002.199101.56490HepG2SF3B1
TSPAN17ENSG00000048140.13677.74480471.272300.524104.876804.12660HepG2SF3B4
TSPAN17ENSG00000048140.13451.11020285.659400.659106.737505.80240HepG2SMN1
TSPAN17ENSG00000048140.13385.55000247.037300.642103.459502.37240HepG2SMNDC1
TSPAN17ENSG00000048140.131312.29950627.763101.0637030.0072028.81440HepG2SRFBP1
TSPAN17ENSG00000048140.13250.66650393.40160-0.650203.690901.82990HepG2SRP68
TSPAN17ENSG00000048140.13312.54290400.14350-0.356501.927301.45060HepG2SRSF9
TSPAN17ENSG00000048140.13373.85420545.02030-0.543805.454604.78230HepG2SSB
TSPAN17ENSG00000048140.13600.93820453.363000.406503.236302.57430HepG2SUCLG1
TSPAN17ENSG00000048140.13355.36890257.543400.464402.228001.38030HepG2SUPT6H
TSPAN17ENSG00000048140.13426.48150293.181600.540603.248902.47000HepG2TARDBP
TSPAN17ENSG00000048140.13480.30790267.290400.845508.655107.85990HepG2TIAL1
TSPAN17ENSG00000048140.13574.08880178.401601.686006.590004.99090HepG2U2AF2
TSPAN17ENSG00000048140.13350.35210242.890300.528402.779302.01760HepG2UCHL5
TSPAN17ENSG00000048140.13467.77490341.087100.455603.633502.84900HepG2UPF1
TSPAN17ENSG00000048140.13517.05760266.170800.957907.097105.46920HepG2XRCC6
TSPAN17ENSG00000048140.13667.55810375.130800.8314014.0654013.07130HepG2ZNF622
TSPAN17ENSG00000048140.132549.766301900.856100.423604.191902.66040K562ABCF1
TSPAN17ENSG00000048140.132809.469602161.162000.378403.765802.28860K562APOBEC3C
TSPAN17ENSG00000048140.132790.081602313.435200.270201.883701.38200K562AQR
TSPAN17ENSG00000048140.131772.722701439.719800.300103.733502.60940K562BCLAF1
TSPAN17ENSG00000048140.131507.652901092.242200.464906.099604.44750K562CSTF2
TSPAN17ENSG00000048140.134962.327203011.681800.7203017.6436015.37710K562CELF1
TSPAN17ENSG00000048140.132298.112501731.541500.408305.922004.10800K562DDX21
TSPAN17ENSG00000048140.131155.333302072.87430-0.8433022.5214020.78160K562EIF2S2
TSPAN17ENSG00000048140.13971.66460656.649700.565207.304006.02170K562EIF3G
TSPAN17ENSG00000048140.131005.94490811.410400.309902.681301.55200K562EIF4B
TSPAN17ENSG00000048140.13515.04910702.50170-0.447803.363301.58290K562FASTKD2
TSPAN17ENSG00000048140.132083.541601366.416900.608507.977806.46210K562FIP1L1
TSPAN17ENSG00000048140.13667.33050895.05820-0.423602.829901.68910K562FKBP4
TSPAN17ENSG00000048140.13810.048301033.45280-0.351402.428201.62450K562FMR1
TSPAN17ENSG00000048140.131754.67030937.055200.9049018.4819017.02560K562FXR1
TSPAN17ENSG00000048140.13242.40160529.26910-1.126609.877308.38410K562G3BP2
TSPAN17ENSG00000048140.131840.276101377.928900.417305.678404.07680K562GLRX3
TSPAN17ENSG00000048140.131224.61980969.664800.336702.568801.80170K562GPKOW
TSPAN17ENSG00000048140.132128.840701735.212100.294902.737101.67050K562HNRNPA1
TSPAN17ENSG00000048140.131470.388301852.55870-0.333302.595801.82340K562HSPD1
TSPAN17ENSG00000048140.131153.24780840.277700.456702.984301.90650K562IGF2BP2
TSPAN17ENSG00000048140.131374.388201089.270200.335302.633201.83100K562KIF1C
TSPAN17ENSG00000048140.131201.56120828.037600.537003.632302.54650K562KRR1
TSPAN17ENSG00000048140.131191.85620882.930300.432704.203303.16380K562MAGOH
TSPAN17ENSG00000048140.131457.64060881.113400.7261011.522009.52920K562MATR3
TSPAN17ENSG00000048140.131815.171801448.699000.325203.578302.66580K562MTPAP
TSPAN17ENSG00000048140.132467.592601609.710600.6162021.5528019.75550K562NSUN2
TSPAN17ENSG00000048140.131933.734201551.166400.317902.452601.68340K562PPIG
TSPAN17ENSG00000048140.131349.91980857.834700.654009.631308.44670K562PTBP1
TSPAN17ENSG00000048140.131256.530401017.919600.303702.049301.56850K562PUS1
TSPAN17ENSG00000048140.131288.65350991.795100.377704.057503.35620K562RBM15
TSPAN17ENSG00000048140.131083.05930822.468900.397003.220702.30790K562RBM22
TSPAN17ENSG00000048140.13818.49480646.782600.339603.503301.72470K562RPS10
TSPAN17ENSG00000048140.131795.283701167.324600.620904.681002.94440K562RRP9
TSPAN17ENSG00000048140.132025.912401378.667400.555204.587102.25830K562SAFB2
TSPAN17ENSG00000048140.131639.396801321.593500.310802.631101.57840K562SAFB
TSPAN17ENSG00000048140.132058.628901276.343100.689604.582902.51870K562SBDS
TSPAN17ENSG00000048140.131925.154201588.260700.277402.964602.12260K562SF3A3
TSPAN17ENSG00000048140.13753.52280550.548700.452703.561502.58670K562SF3B4
TSPAN17ENSG00000048140.131114.40370840.645600.406603.250801.86920K562SLBP
TSPAN17ENSG00000048140.131987.738301627.197200.288604.248603.11470K562SRPK2
TSPAN17ENSG00000048140.131146.31090840.982900.446804.435303.54470K562SRSF1
TSPAN17ENSG00000048140.132170.193301545.404300.489706.372504.58390K562SRSF7
TSPAN17ENSG00000048140.131634.297301105.186200.564304.901703.51630K562SUPV3L1
TSPAN17ENSG00000048140.13318.44070519.55710-0.706303.231001.60530K562TAF15
TSPAN17ENSG00000048140.131652.46180851.088800.9571015.6112013.66270K562TARDBP
TSPAN17ENSG00000048140.131009.02680820.981900.297402.196501.47410K562TIA1
TSPAN17ENSG00000048140.131145.84520888.844300.366302.423301.55010K562TIAL1
TSPAN17ENSG00000048140.131291.20610944.386800.451204.319203.07740K562TRIM56
TSPAN17ENSG00000048140.131949.346201518.650200.360106.103504.89940K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSPAN17 is not available on ENCORE database.





23 RBPs can affect the splicing of TSPAN17 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083126-0.187000.002240.03992excludedK562SRSF1
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083135-0.265000.000070.00214excludedK562SF3B4
SETSPAN17ENSG00000048140.13chr5+176083895176083957176083700176083817176084518176086052-0.319000.000000.00000excludedK562PRPF8
SETSPAN17ENSG00000048140.13chr5+1760818951760820211760797431760799141760830781760831350.153000.000080.01803includedK562MATR3
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083135-0.116000.000980.03116excludedK562AKAP8L
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083126-0.070000.008540.07163excludedK562AQR
SETSPAN17ENSG00000048140.13chr5+1760818951760820211760797431760799141760830781760831260.105000.000190.01030includedK562FXR1
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083126-0.153000.000030.00076excludedK562PUS1
SETSPAN17ENSG00000048140.13chr5+176083895176083957176083700176083817176084518176086052-0.338000.000000.00002excludedK562EFTUD2
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083135-0.199000.005100.08264excludedK562U2AF1
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083126-0.115000.000050.01290excludedK562SRSF7
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083126-0.170000.000010.00082excludedK562UTP18
SETSPAN17ENSG00000048140.13chr5+176081895176082021176079743176079914176083078176083126-0.117000.000880.02509excludedK562AGGF1
A5SSTSPAN17ENSG00000048140.13chr5+1760797431760820211760797431760799141760830781760831260.278000.000450.06664longerK562TARDBP
A5SSTSPAN17ENSG00000048140.13chr5+1760797431760820211760797431760799141760830781760831260.191000.000660.05632longerK562FXR1
A5SSTSPAN17ENSG00000048140.13chr5+176079743176082021176079743176079914176083078176083126-0.250000.001190.09118shorterK562UTP18
RITSPAN17ENSG00000048140.13chr5+1760797431760820211760797431760799141760818951760820210.077000.001750.04146includedHepG2UCHL5
RITSPAN17ENSG00000048140.13chr5+176079743176082021176079743176079914176081895176082021-0.060000.000950.05723excludedK562KHSRP
RITSPAN17ENSG00000048140.13chr5+1760797431760820211760797431760799141760818951760820210.123000.000780.01671includedHepG2G3BP1
RITSPAN17ENSG00000048140.13chr5+1760797431760820211760797431760799141760818951760820210.197000.000000.00000includedK562U2AF2
RITSPAN17ENSG00000048140.13chr5+1760797431760820211760797431760799141760818951760820210.053000.002930.03003includedK562EFTUD2
RITSPAN17ENSG00000048140.13chr5+1760797431760820211760797431760799141760818951760820210.135000.000000.00000includedK562AQR
RITSPAN17ENSG00000048140.13chr5+176079743176082021176079743176079914176081895176082021-0.057000.000860.01936excludedK562PTBP1
MXETSPAN17ENSG00000048140.13chr5+176083700176083817176083895176083957176083078176083126176084518176086054-0.434000.000100.005832includedHepG2TAF15
MXETSPAN17ENSG00000048140.13chr5+176078754176078901176079743176079914176078616176078667176083078176083126-0.357000.000040.004172includedK562LIN28B
MXETSPAN17ENSG00000048140.13chr5+176078754176078901176079743176079914176078616176078667176083078176083126-0.291000.000890.052312includedK562LARP7
MXETSPAN17ENSG00000048140.13chr5+176083700176083817176083895176083957176083078176083126176084518176086054-0.355000.000290.054032includedK562HNRNPM

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TSPAN17 is not avaliable on ENCORE database.