TRO

General Information

Gene Name : TRO
Gene ID : ENSG00000067445.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRO)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRO	ENSG00000067445.20	0.00	0.01	0.01	ENCSR000AEF
HepG2	TRO	ENSG00000067445.20	13.46	16.97	15.21	ENCSR985KAT
K562	TRO	ENSG00000067445.20	0.53	0.89	0.71	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRO is not avaliable on ENCORE database.

Proteins bound to RNA

TRO RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for TRO is not avaliable on ENCORE database.

10 proteins are bound to TRO RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	54953792	54953851	+	intron-Distal	3.53776	400.00000	HepG2	DKC1
chrX	54953858	54953868	+	intron-Distal	3.86697	44.02831	HepG2	DKC1
chrX	54953778	54953786	+	intron-Distal	3.76798	37.54442	HepG2	DKC1
chrX	54953751	54953778	+	intron-Distal	3.20034	28.83839	HepG2	DKC1
chrX	54955035	54955095	+	CDS,intron-Proximal	3.96203	11.41042	HepG2	PPIG
chrX	54955095	54955146	+	CDS,intron-Proximal	4.90222	10.78364	HepG2	PPIG
chrX	54953173	54953253	+	intron-Distal	3.40638	10.11361	HepG2	BCLAF1
chrX	54953034	54953122	+	CDS,intron-Proximal	4.31373	8.68543	HepG2	PPIG
chrX	54952888	54952923	+	CDS,intron-Proximal	4.25660	7.16838	HepG2	BCLAF1
chrX	54955035	54955098	+	CDS,intron-Proximal	3.16025	6.86395	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 27 entries

eCLIP assay for TRO is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRO is not available on ENCORE database.
89 RBPs can affect the levels of TRO.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TRO is not available on ENCORE database.

89 RBPs can affect the gene expression of TRO :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRO	ENSG00000067445.16	168.73570	903.65560	-2.42100	96.54020	94.56100	HepG2	ZNF622
TRO	ENSG00000067445.16	190.76770	654.58660	-1.77880	27.06000	25.43000	HepG2	HNRNPLL
TRO	ENSG00000067445.16	197.44980	647.92920	-1.71430	27.02040	25.08870	HepG2	SF3B1
TRO	ENSG00000067445.16	1290.82920	705.74860	0.87100	18.19220	16.93680	HepG2	TAF15
TRO	ENSG00000067445.16	1397.39770	804.11100	0.79720	17.04090	15.91980	HepG2	NELFE
TRO	ENSG00000067445.16	2406.85130	1037.64560	1.21370	17.47820	15.23190	HepG2	CCAR1
TRO	ENSG00000067445.16	1451.50000	981.38770	0.56450	12.97100	11.61090	HepG2	HNRNPL
TRO	ENSG00000067445.16	325.21820	659.06510	-1.01900	12.07470	10.94340	HepG2	BOP1
TRO	ENSG00000067445.16	609.92730	1002.13960	-0.71640	11.32990	10.20300	HepG2	CELF1
TRO	ENSG00000067445.16	1505.62640	1023.38440	0.55690	10.08710	8.91290	HepG2	AUH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRO is not available on ENCORE database.

5 RBPs can affect the splicing of TRO :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRO	ENSG00000067445.16	chrX	+	54957173	54957464	54955035	54955143	54957636	54957864	-0.52900	0.00000	0.00000	excluded	HepG2	SRSF1
A5SS	TRO	ENSG00000067445.16	chrX	+	54955035	54957464	54955035	54955143	54957636	54957864	-0.42900	0.00000	0.00003	shorter	HepG2	SRSF1
RI	TRO	ENSG00000067445.16	chrX	+	54955035	54957464	54955035	54955143	54957173	54957464	-0.26600	0.00074	0.05857	excluded	HepG2	HNRNPL
RI	TRO	ENSG00000067445.16	chrX	+	54955035	54957464	54955035	54955143	54957173	54957464	-0.29000	0.00368	0.09067	excluded	HepG2	TIA1
RI	TRO	ENSG00000067445.16	chrX	+	54955035	54957464	54955035	54955143	54957173	54957464	-0.24100	0.00778	0.07075	excluded	HepG2	QKI
RI	TRO	ENSG00000067445.16	chrX	+	54955035	54957464	54955035	54955143	54957173	54957464	0.20400	0.00858	0.06771	included	HepG2	RBM22

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRO

General Information

Functions

Localization

Domains (AlphaFold: TRO)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRO is not avaliable on ENCORE database.

10 proteins are bound to TRO RNA:

eCLIP assay for TRO is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRO is not available on ENCORE database.

89 RBPs can affect the gene expression of TRO :

The Knockdown/knockout RNA-Seq assay for TRO is not available on ENCORE database.

5 RBPs can affect the splicing of TRO :

The Knockdown/knockout RNA-Seq assay for TRO is not avaliable on ENCORE database.