TPR

General Information

Gene Name : TPR
Gene ID : ENSG00000047410.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TPR)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TPR	ENSG00000047410.13	54.51	60.92	57.72	ENCSR000AEF
HepG2	TPR	ENSG00000047410.13	41.46	44.57	43.02	ENCSR985KAT
K562	TPR	ENSG00000047410.13	107.01	92.53	99.77	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TPR is not avaliable on ENCORE database.

Proteins bound to RNA

TPR RNA is bound by 41 proteins.

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eCLIP assay for TPR is not avaliable on ENCORE database.

41 proteins are bound to TPR RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	186295287	186295354	-	CDS,intron-Distal,intron-Proximal	5.04366	69.58880	K562	UCHL5
chr1	186295254	186295287	-	CDS,intron-Distal	5.65742	50.31947	K562	UCHL5
chr1	186329430	186329489	-	CDS,intron-Distal	3.65617	47.65525	K562	ZNF622
chr1	186329452	186329496	-	CDS,intron-Distal	3.99982	45.91410	K562	UCHL5
chr1	186310386	186310467	-	CDS,intron-Distal,intron-Proximal	4.87763	42.90295	K562	UCHL5
chr1	186303576	186303648	-	CDS,intron-Distal	4.34436	41.59331	K562	UCHL5
chr1	186326545	186326628	-	CDS,intron-Distal	3.19809	41.34567	K562	ZNF622
chr1	186294934	186294986	-	CDS,intron-Distal	4.04731	37.60345	K562	UCHL5
chr1	186303573	186303638	-	CDS,intron-Distal	3.97040	35.10631	K562	ZNF622
chr1	186321141	186321206	-	CDS,intron-Distal,intron-Proximal	4.53080	34.06607	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 381 entries

eCLIP assay for TPR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TPR is not available on ENCORE database.
101 RBPs can affect the levels of TPR.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TPR is not available on ENCORE database.

101 RBPs can affect the gene expression of TPR :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TPR	ENSG00000047410.9	1545.30170	4789.21030	-1.63190	44.39750	42.18050	HepG2	DDX3X
TPR	ENSG00000047410.9	4795.00510	7680.63970	-0.67970	39.97990	38.53470	HepG2	ZNF622
TPR	ENSG00000047410.9	7482.95780	4545.09950	0.71920	34.86030	33.59790	HepG2	SRSF1
TPR	ENSG00000047410.9	8016.09500	15548.77010	-0.95580	29.05040	26.50690	K562	GRSF1
TPR	ENSG00000047410.9	2816.53940	4336.33260	-0.62260	26.14640	24.33670	HepG2	DNAJC2
TPR	ENSG00000047410.9	2095.24520	4540.59110	-1.11580	21.03500	19.39140	HepG2	NCBP2
TPR	ENSG00000047410.9	3586.30230	6448.62720	-0.84650	20.30420	18.88690	HepG2	PUF60
TPR	ENSG00000047410.9	4690.31660	6742.40300	-0.52360	17.96550	16.63760	HepG2	UTP3
TPR	ENSG00000047410.9	6405.54090	11958.13310	-0.90060	18.59140	16.44800	K562	TARDBP
TPR	ENSG00000047410.9	5429.73420	9129.50890	-0.74970	15.74670	14.40620	K562	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 127 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TPR is not available on ENCORE database.

14 RBPs can affect the splicing of TPR :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TPR	ENSG00000047410.9	chr1	-	186325778	186325871	186325417	186325581	186326528	186326755	0.06400	0.00000	included	K562	AQR
SE	TPR	ENSG00000047410.9	chr1	-	186322819	186322982	186321107	186321242	186324541	186324690	-0.11500	0.00000	excluded	K562	AQR
SE	TPR	ENSG00000047410.9	chr1	-	186308773	186308904	186307318	186307375	186310159	186310291	-0.07300	0.00000	excluded	K562	AQR
SE	TPR	ENSG00000047410.9	chr1	-	186300665	186300713	186296591	186296792	186301326	186301493	-0.07600	0.00001	excluded	K562	AQR
SE	TPR	ENSG00000047410.9	chr1	-	186283760	186283930	186280783	186283158	186286613	186286806	-0.10100	0.00000	excluded	K562	AQR
SE	TPR	ENSG00000047410.9	chr1	-	186304199	186304261	186303456	186303665	186304469	186304675	-0.08600	0.00000	excluded	K562	AQR
SE	TPR	ENSG00000047410.9	chr1	-	186325778	186325871	186325417	186325581	186326528	186326755	0.05600	0.00003	included	HepG2	SF3A3
SE	TPR	ENSG00000047410.9	chr1	-	186322819	186322982	186321107	186321242	186324541	186324690	-0.09900	0.00000	excluded	HepG2	SF3A3
SE	TPR	ENSG00000047410.9	chr1	-	186322819	186322982	186321107	186321242	186324541	186324690	-0.05700	0.00008	excluded	K562	SF3B1
SE	TPR	ENSG00000047410.9	chr1	-	186322819	186322982	186321107	186321242	186324541	186324690	-0.06700	0.00002	excluded	K562	HNRNPC

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TPR

General Information

Functions

Localization

Domains (AlphaFold: TPR)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TPR is not avaliable on ENCORE database.

41 proteins are bound to TPR RNA:

eCLIP assay for TPR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TPR is not available on ENCORE database.

101 RBPs can affect the gene expression of TPR :

The Knockdown/knockout RNA-Seq assay for TPR is not available on ENCORE database.

14 RBPs can affect the splicing of TPR :

The Knockdown/knockout RNA-Seq assay for TPR is not avaliable on ENCORE database.