STRADB

General Information

Gene Name : STRADB
Gene ID : ENSG00000082146.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: STRADB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	STRADB	ENSG00000082146.12	29.42	26.52	27.97	ENCSR000AEF
HepG2	STRADB	ENSG00000082146.12	35.32	57.77	46.55	ENCSR985KAT
K562	STRADB	ENSG00000082146.12	16.20	18.49	17.34	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for STRADB is not avaliable on ENCORE database.

Proteins bound to RNA

STRADB RNA is bound by 7 proteins.

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eCLIP assay for STRADB is not avaliable on ENCORE database.

7 proteins are bound to STRADB RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	202316486	202316589	+	5'-UTR,intron-Distal	4.34043	11.21395	HepG2	DDX3X
chr2	202316692	202316793	+	intron-Distal,intron-Proximal	4.63025	10.43503	HepG2	EFTUD2
chr2	202342924	202343086	+	CDS,intron-Distal,intron-Proximal	4.01278	5.95946	K562	KHSRP
chr2	202340341	202340458	+	CDS,intron-Proximal	4.22039	5.79432	HepG2	BCLAF1
chr2	202323800	202323872	+	intron-Distal	4.86278	5.04769	HepG2	PTBP1
chr2	202316610	202316663	+	5'-UTR,intron-Distal,intron-Proximal	3.92317	4.26442	K562	DDX3X
chr2	202332045	202332173	+	intron-Distal	3.03733	3.50296	HepG2	SUGP2
chr2	202339381	202339479	+	3'-UTR,CDS,intron-Proximal	3.76729	3.22721	K562	YBX3
chr2	202328251	202328308	+	intron-Distal	3.95031	3.04224	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 9 of 9 entries

eCLIP assay for STRADB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for STRADB is not available on ENCORE database.
93 RBPs can affect the levels of STRADB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for STRADB is not available on ENCORE database.

93 RBPs can affect the gene expression of STRADB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
STRADB	ENSG00000082146.8	3505.99320	1694.92940	1.04850	51.04790	49.51900	HepG2	SSB
STRADB	ENSG00000082146.8	759.57340	1846.85300	-1.28180	48.84430	46.91340	HepG2	RECQL
STRADB	ENSG00000082146.8	537.06090	1245.76150	-1.21390	35.47870	33.14660	HepG2	PARN
STRADB	ENSG00000082146.8	933.81870	1751.11270	-0.90710	26.77330	25.21290	HepG2	PCBP1
STRADB	ENSG00000082146.8	502.52790	1120.37250	-1.15670	18.75180	16.56950	HepG2	ADAR
STRADB	ENSG00000082146.8	451.75750	969.96670	-1.10240	18.95950	16.51070	HepG2	FASTKD2
STRADB	ENSG00000082146.8	964.24010	1751.38260	-0.86100	16.29400	14.73700	HepG2	RBM25
STRADB	ENSG00000082146.8	1047.20030	1740.40490	-0.73290	15.52060	14.35450	HepG2	TAF15
STRADB	ENSG00000082146.8	281.10380	596.86370	-1.08630	15.54240	14.03340	K562	PTBP1
STRADB	ENSG00000082146.8	1126.78370	1781.80020	-0.66110	14.90020	13.82720	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 107 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for STRADB is not available on ENCORE database.

7 RBPs can affect the splicing of STRADB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	STRADB	ENSG00000082146.8	chr2	+	202334675	202334775			202323506	202323587	202337677	202337799	-0.05200	0.00000	0.00000	excluded	HepG2	U2AF2
SE	STRADB	ENSG00000082146.8	chr2	+	202334675	202334775			202323506	202323587	202337677	202337739	-0.21100	0.00000	0.00000	excluded	HepG2	MATR3
MXE	STRADB	ENSG00000082146.8	chr2	+	202323506	202323587	202334675	202334775	202319468	202319575	202337677	202337799	0.08800	0.00000	0.00000	1included	HepG2	SFPQ
MXE	STRADB	ENSG00000082146.8	chr2	+	202323506	202323587	202334675	202334775	202319468	202319575	202337677	202337799	0.11300	0.00000	0.00000	1included	HepG2	U2AF2
MXE	STRADB	ENSG00000082146.8	chr2	+	202323506	202323587	202334675	202334775	202319468	202319575	202337677	202337799	0.06400	0.00001	0.00054	1included	HepG2	HNRNPUL1
SE	STRADB	ENSG00000082146.8	chr2	+	202334675	202334775			202323506	202323587	202337677	202337799	-0.05300	0.00005	0.00254	excluded	HepG2	SF3A3
SE	STRADB	ENSG00000082146.8	chr2	+	202334675	202334775			202323506	202323587	202337677	202337799	-0.05700	0.00010	0.00681	excluded	HepG2	HNRNPU
SE	STRADB	ENSG00000082146.8	chr2	+	202334675	202334775			202323506	202323587	202337677	202337799	-0.13700	0.00022	0.03865	excluded	K562	MATR3
SE	STRADB	ENSG00000082146.8	chr2	+	202343079	202343324			202342809	202342914	202344211	202344254	-0.21200	0.00048	0.01151	excluded	K562	SF3B4

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

STRADB

General Information

Functions

Localization

Domains (AlphaFold: STRADB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for STRADB is not avaliable on ENCORE database.

7 proteins are bound to STRADB RNA:

eCLIP assay for STRADB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for STRADB is not available on ENCORE database.

93 RBPs can affect the gene expression of STRADB :

The Knockdown/knockout RNA-Seq assay for STRADB is not available on ENCORE database.

7 RBPs can affect the splicing of STRADB :

The Knockdown/knockout RNA-Seq assay for STRADB is not avaliable on ENCORE database.