STRADB

General Information

Gene Name       : STRADB
Gene ID             : ENSG00000082146.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: STRADB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STRADBENSG00000082146.1229.4226.5227.97ENCSR000AEF
HepG2STRADBENSG00000082146.1235.3257.7746.55ENCSR985KAT
K562STRADBENSG00000082146.1216.2018.4917.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STRADB is not avaliable on ENCORE database.



Proteins bound to RNA
  • STRADB RNA is bound by 7 proteins.  







eCLIP assay for STRADB is not avaliable on ENCORE database.





7 proteins are bound to STRADB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2202339381202339479+3'-UTR,CDS,intron-Proximal3.767293.22721K562YBX3
chr2202316610202316663+5'-UTR,intron-Distal,intron-Proximal3.923174.26442K562DDX3X
chr2202316486202316589+5'-UTR,intron-Distal4.3404311.21395HepG2DDX3X
chr2202342924202343086+CDS,intron-Distal,intron-Proximal4.012785.95946K562KHSRP
chr2202340341202340458+CDS,intron-Proximal4.220395.79432HepG2BCLAF1
chr2202328251202328308+intron-Distal3.950313.04224HepG2SUGP2
chr2202323800202323872+intron-Distal4.862785.04769HepG2PTBP1
chr2202316692202316793+intron-Distal,intron-Proximal4.6302510.43503HepG2EFTUD2
chr2202332045202332173+intron-Distal3.037333.50296HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STRADB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STRADB is not available on ENCORE database.

  • 93 RBPs can affect the levels of STRADB.  








The Knockdown/knockout RNA-Seq assay for STRADB is not available on ENCORE database.





93 RBPs can affect the gene expression of STRADB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STRADBENSG00000082146.8502.527901120.37250-1.1567018.7518016.56950HepG2ADAR
STRADBENSG00000082146.81437.358002139.43690-0.573804.962004.27650HepG2AKAP1
STRADBENSG00000082146.81188.735401831.65610-0.623705.108103.76380HepG2CCAR1
STRADBENSG00000082146.8929.356401118.39620-0.267102.904302.22690HepG2CKAP4
STRADBENSG00000082146.8982.61290715.280900.458002.159601.48900HepG2CNOT7
STRADBENSG00000082146.81628.278901219.355400.417103.815703.02080HepG2CPSF6
STRADBENSG00000082146.81003.794501247.09310-0.313102.378101.35490HepG2CPSF7
STRADBENSG00000082146.81208.812501672.24050-0.4682010.012808.74190HepG2DAZAP1
STRADBENSG00000082146.81268.851001034.658300.294303.713202.76540HepG2DDX19B
STRADBENSG00000082146.8836.405501150.54880-0.460005.380803.81640HepG2DDX1
STRADBENSG00000082146.81581.270001018.036100.635208.111607.01340HepG2DDX21
STRADBENSG00000082146.81545.47680995.873300.633907.525806.03160HepG2DDX24
STRADBENSG00000082146.81556.241801016.348200.614605.010403.34030HepG2DDX27
STRADBENSG00000082146.83107.990302049.559100.600606.776005.83930HepG2DDX3X
STRADBENSG00000082146.81116.97100862.735700.372502.907801.58300HepG2DDX47
STRADBENSG00000082146.81288.022701070.350500.267002.647101.98330HepG2DKC1
STRADBENSG00000082146.81328.721401128.195100.235902.028801.41680HepG2DNAJC21
STRADBENSG00000082146.8410.88440860.31070-1.0661014.3576011.95030HepG2EFTUD2
STRADBENSG00000082146.81274.316701692.53090-0.409502.627702.04970HepG2EIF2S1
STRADBENSG00000082146.82688.197001870.604300.523004.671203.84370HepG2EIF4A3
STRADBENSG00000082146.81014.666001820.99290-0.843707.897506.76570HepG2EIF4B
STRADBENSG00000082146.81967.298101649.660800.253902.666801.84190HepG2EIF4G1
STRADBENSG00000082146.8451.75750969.96670-1.1024018.9595016.51070HepG2FASTKD2
STRADBENSG00000082146.8745.590201101.27390-0.562705.924804.79520HepG2FUBP3
STRADBENSG00000082146.81466.923401886.88120-0.363202.238701.61420HepG2FXR1
STRADBENSG00000082146.81057.252001750.61150-0.727507.197206.14880HepG2G3BP1
STRADBENSG00000082146.8965.35620745.900600.372002.421301.58840HepG2GEMIN5
STRADBENSG00000082146.8871.837601107.06280-0.344602.253301.33830HepG2GNB2L1
STRADBENSG00000082146.81614.005101139.002700.502804.350903.56480HepG2HNRNPA1
STRADBENSG00000082146.81601.813001266.903900.338302.726502.03760HepG2HNRNPC
STRADBENSG00000082146.81085.051601275.76160-0.233602.359001.69280HepG2HNRNPF
STRADBENSG00000082146.8898.641701772.06320-0.9796012.2181010.85280HepG2HNRNPK
STRADBENSG00000082146.81170.487801523.32080-0.380106.616405.61800HepG2HNRNPL
STRADBENSG00000082146.82316.103401319.166700.812008.468107.43180HepG2HNRNPLL
STRADBENSG00000082146.81292.316401789.75340-0.469803.022701.96810HepG2KHSRP
STRADBENSG00000082146.8887.137101933.61130-1.1241014.9954013.10190HepG2LARP4
STRADBENSG00000082146.81373.900301658.18360-0.271302.662301.91470HepG2NOL12
STRADBENSG00000082146.8394.07870653.68510-0.730103.944102.87140HepG2PABPC1
STRADBENSG00000082146.81205.063501730.62110-0.522204.265603.38120HepG2PABPC4
STRADBENSG00000082146.8537.060901245.76150-1.2139035.4787033.14660HepG2PARN
STRADBENSG00000082146.8933.818701751.11270-0.9071026.7733025.21290HepG2PCBP1
STRADBENSG00000082146.8530.332501211.92520-1.1923012.7838010.79790HepG2PCBP2
STRADBENSG00000082146.81126.783701781.80020-0.6611014.9002013.82720HepG2PTBP1
STRADBENSG00000082146.82063.240401582.846800.382303.750803.06850HepG2PUF60
STRADBENSG00000082146.81156.019901680.22130-0.5395013.1025012.01390HepG2PUM1
STRADBENSG00000082146.81351.989601679.01910-0.312502.858302.17760HepG2PUM2
STRADBENSG00000082146.81480.637201139.551400.377705.725204.89760HepG2PUS1
STRADBENSG00000082146.81538.923101929.78140-0.326503.690202.98500HepG2QKI
STRADBENSG00000082146.81930.847301169.593200.723104.614803.71750HepG2RAVER1
STRADBENSG00000082146.8964.240101751.38260-0.8610016.2940014.73700HepG2RBM25
STRADBENSG00000082146.8759.573401846.85300-1.2818048.8443046.91340HepG2RECQL
STRADBENSG00000082146.81500.249401206.243900.314602.076901.37730HepG2RPS2
STRADBENSG00000082146.81095.26320717.999600.609104.243503.25220HepG2RPS3A
STRADBENSG00000082146.81188.811801580.98160-0.411302.404401.77680HepG2SF3A3
STRADBENSG00000082146.81363.033401855.12420-0.444707.590706.68990HepG2SF3B4
STRADBENSG00000082146.8415.246701141.04000-1.458309.854507.10990HepG2SLTM
STRADBENSG00000082146.81115.652101307.05840-0.228402.551301.92920HepG2SMN1
STRADBENSG00000082146.8746.245601137.91450-0.608704.458302.39540HepG2SND1
STRADBENSG00000082146.81610.448501952.15710-0.277603.798903.23980HepG2SRFBP1
STRADBENSG00000082146.81344.577001562.78210-0.217002.230001.66080HepG2SRSF5
STRADBENSG00000082146.81074.598501575.29480-0.5518011.3392010.35560HepG2SRSF9
STRADBENSG00000082146.83505.993201694.929401.0485051.0479049.51900HepG2SSB
STRADBENSG00000082146.81047.200301740.40490-0.7329015.5206014.35450HepG2TAF15
STRADBENSG00000082146.81607.662301285.549000.322502.484301.79150HepG2TARDBP
STRADBENSG00000082146.81235.398901599.24330-0.372403.901602.91770HepG2TIA1
STRADBENSG00000082146.81471.389001222.994300.266702.269001.80720HepG2TIAL1
STRADBENSG00000082146.8638.738801174.29960-0.878507.588305.25090HepG2TRA2A
STRADBENSG00000082146.8952.330501233.82240-0.373604.954704.24400HepG2TRIM56
STRADBENSG00000082146.81650.220801308.042800.335102.430301.83820HepG2U2AF1
STRADBENSG00000082146.81792.350901402.088500.354205.543304.60800HepG2UPF1
STRADBENSG00000082146.8859.717601441.15410-0.7453015.8308013.63580HepG2UTP18
STRADBENSG00000082146.81098.715001353.66200-0.301103.462402.80610HepG2UTP3
STRADBENSG00000082146.81913.090101542.029600.311005.321404.62510HepG2ZNF622
STRADBENSG00000082146.8820.959401039.41420-0.340402.073101.50530K562AKAP8L
STRADBENSG00000082146.8502.39090700.22440-0.479003.289502.66030K562AQR
STRADBENSG00000082146.8409.01750550.95580-0.429802.868502.07180K562CPSF6
STRADBENSG00000082146.8207.52340392.32780-0.918807.394005.83700K562EFTUD2
STRADBENSG00000082146.8506.82620623.65170-0.299201.980501.35400K562EIF2S2
STRADBENSG00000082146.81427.375101066.473200.420405.354404.06730K562EIF4G2
STRADBENSG00000082146.8709.83610483.002200.555403.390102.59280K562G3BP2
STRADBENSG00000082146.8218.67210494.17200-1.1762013.4407012.20890K562HNRNPC
STRADBENSG00000082146.8201.32010441.32410-1.1323011.831309.43920K562HNRNPF
STRADBENSG00000082146.8767.29910591.159200.376103.196302.23920K562HNRNPU
STRADBENSG00000082146.8396.32670584.35620-0.560203.317702.15880K562IGF2BP2
STRADBENSG00000082146.8316.63210478.62490-0.596104.417802.60210K562LARP7
STRADBENSG00000082146.8418.42480614.35020-0.554104.819003.70130K562MAGOH
STRADBENSG00000082146.8326.80910513.45080-0.651805.328604.09000K562METAP2
STRADBENSG00000082146.8660.70070866.22610-0.390702.078001.33590K562NAA15
STRADBENSG00000082146.8854.45160590.966600.531802.650901.44670K562PABPC1
STRADBENSG00000082146.8276.64620546.65880-0.9826010.481708.51940K562PCBP2
STRADBENSG00000082146.8982.17220527.487100.896709.931408.36210K562PCBP3
STRADBENSG00000082146.8679.19730404.604000.747208.371407.00390K562POLR2G
STRADBENSG00000082146.8266.81550381.77990-0.516902.610901.88170K562PRPF8
STRADBENSG00000082146.8328.73780443.08470-0.430602.291301.47570K562PSIP1
STRADBENSG00000082146.8281.10380596.86370-1.0863015.5424014.03340K562PTBP1
STRADBENSG00000082146.8885.063601163.60330-0.394703.153202.28460K562PUF60
STRADBENSG00000082146.8528.312101031.05710-0.964709.966808.98340K562PUS1
STRADBENSG00000082146.8262.23490572.43840-1.1263014.3309012.23720K562RBM22
STRADBENSG00000082146.8574.57480390.360800.557603.008501.61790K562RRP9
STRADBENSG00000082146.8461.77850612.05610-0.406503.324602.43480K562SF3A3
STRADBENSG00000082146.8334.60970502.40240-0.586405.079103.90290K562SF3B4
STRADBENSG00000082146.8393.18030585.10130-0.573504.812103.88460K562SRSF1
STRADBENSG00000082146.8445.61550592.21260-0.410302.517801.84050K562TARDBP
STRADBENSG00000082146.8598.50000426.168900.489803.071402.08110K562TIAL1
STRADBENSG00000082146.8607.53580483.665300.328902.215601.49690K562U2AF2
STRADBENSG00000082146.8705.804401045.13820-0.566402.511201.30130K562UTP18
STRADBENSG00000082146.81075.03060788.754700.446604.072202.99170K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STRADB is not available on ENCORE database.





7 RBPs can affect the splicing of STRADB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTRADBENSG00000082146.8chr2+202343079202343324202342809202342914202344211202344254-0.212000.000480.01151excludedK562SF3B4
SESTRADBENSG00000082146.8chr2+202334675202334775202323506202323587202337677202337799-0.137000.000220.03865excludedK562MATR3
SESTRADBENSG00000082146.8chr2+202334675202334775202323506202323587202337677202337799-0.052000.000000.00000excludedHepG2U2AF2
SESTRADBENSG00000082146.8chr2+202334675202334775202323506202323587202337677202337739-0.211000.000000.00000excludedHepG2MATR3
SESTRADBENSG00000082146.8chr2+202334675202334775202323506202323587202337677202337799-0.053000.000050.00254excludedHepG2SF3A3
SESTRADBENSG00000082146.8chr2+202334675202334775202323506202323587202337677202337799-0.057000.000100.00681excludedHepG2HNRNPU
MXESTRADBENSG00000082146.8chr2+2023235062023235872023346752023347752023194682023195752023376772023377990.088000.000000.000001includedHepG2SFPQ
MXESTRADBENSG00000082146.8chr2+2023235062023235872023346752023347752023194682023195752023376772023377990.113000.000000.000001includedHepG2U2AF2
MXESTRADBENSG00000082146.8chr2+2023235062023235872023346752023347752023194682023195752023376772023377990.064000.000010.000541includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STRADB is not avaliable on ENCORE database.