SERINC3

General Information

Gene Name       : SERINC3
Gene ID             : ENSG00000132824.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SERINC3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SERINC3ENSG00000132824.1326.4427.0826.76ENCSR000AEF
HepG2SERINC3ENSG00000132824.1358.7659.8359.30ENCSR985KAT
K562SERINC3ENSG00000132824.1340.1539.2239.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SERINC3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SERINC3 RNA is bound by 21 proteins.  







eCLIP assay for SERINC3 is not avaliable on ENCORE database.





21 proteins are bound to SERINC3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr204312661543126656-3'-UTR,intron-Distal4.356454.94157HepG2IGF2BP1
chr204312762243127673-3'-UTR,intron-Distal3.621375.05294K562UPF1
chr204312829543128345-3'-UTR,intron-Distal5.3659411.70716HepG2TIAL1
chr204312838243128426-3'-UTR,intron-Distal4.614035.44291K562LIN28B
chr204312755743127634-3'-UTR,intron-Distal4.0114911.04530K562LIN28B
chr204312717243127212-3'-UTR,intron-Distal4.134203.95192HepG2UPF1
chr204312843843128496-3'-UTR,intron-Distal4.119594.20997HepG2UPF1
chr204312734643127394-3'-UTR,intron-Distal4.543665.41983K562LIN28B
chr204312790543128002-3'-UTR,intron-Distal3.010244.07897HepG2UPF1
chr204312878743128840-3'-UTR,intron-Distal,intron-Proximal4.691214.29122HepG2SUB1
chr204312638543126497-3'-UTR,intron-Distal3.660448.42654HepG2UPF1
chr204312634243126448-3'-UTR,intron-Distal4.7791216.89979K562UPF1
chr204312761543127648-3'-UTR,intron-Distal6.0739817.74776HepG2LIN28B
chr204312683043126891-3'-UTR,intron-Distal3.185493.07411K562LIN28B
chr204312623843126283-3'-UTR,intron-Distal3.997137.10876HepG2LIN28B
chr204312893843129013-3'-UTR,CDS,intron-Distal3.254573.34573K562IGF2BP2
chr204312838143128422-3'-UTR,intron-Distal3.780097.07289HepG2LIN28B
chr204312801343128058-3'-UTR,intron-Distal3.919593.19904K562TIA1
chr204312824843128347-3'-UTR,intron-Distal3.110606.30523HepG2FUBP3
chr204312652443126563-3'-UTR,intron-Distal3.252894.14964K562UPF1
chr204312855843128608-3'-UTR,intron-Distal3.097245.00685HepG2ZC3H11A
chr204312827743128340-3'-UTR,intron-Distal4.173663.31110K562TIA1
chr204312845043128496-3'-UTR,intron-Distal5.340287.88172K562LIN28B
chr204312742243127486-3'-UTR,intron-Distal3.299457.59462K562UPF1
chr204312842643128496-3'-UTR,intron-Distal4.4060113.17810HepG2LIN28B
chr204312616243126219-3'-UTR,intron-Distal3.578936.40324K562UPF1
chr204312846943128543-3'-UTR,intron-Distal4.3913317.36161K562PABPC4
chr204312683743126877-3'-UTR,intron-Distal3.114014.48220HepG2LIN28B
chr204312827043128347-3'-UTR,intron-Distal4.892267.75117HepG2TIA1
chr204312756343127615-3'-UTR,intron-Distal6.4903224.53920HepG2LIN28B
chr204314260043142683-5'-UTR,CDS,intron-Distal,intron-Proximal3.345425.59242K562DDX3X
chr204315055243150614-5'-UTR,CDS,intron-Distal4.0515242.74941HepG2DDX3X
chr204315054643150689-5'-UTR,CDS,intron-Distal,intron-Proximal3.2708317.17702HepG2RPS3
chr204315064043150678-5'-UTR,intron-Distal,intron-Proximal3.958958.94209HepG2DDX3X
chr204314261643142682-5'-UTR,CDS,intron-Distal,intron-Proximal4.1926030.38348HepG2DDX3X
chr204313344043133479-CDS,intron-Distal,intron-Proximal3.9702711.04780HepG2IGF2BP1
chr204313547143135493-CDS,intron-Distal3.200856.15304K562YBX3
chr204312980443129843-CDS,intron-Distal3.562696.07859HepG2LIN28B
chr204312987343129932-CDS,intron-Distal3.7294513.57429HepG2LIN28B
chr204313351143133533-CDS,intron-Distal,intron-Proximal3.620626.21348K562YBX3
chr204313261343132636-CDS,intron-Distal3.913054.91480HepG2IGF2BP1
chr204313856643138670-CDS,intron-Distal,intron-Proximal3.637379.44115K562SND1
chr204312984343129873-CDS,intron-Distal4.3544320.00886HepG2LIN28B
chr204312978343129847-CDS,intron-Distal3.791225.31724HepG2SND1
chr204313856643138670-CDS,intron-Distal,intron-Proximal3.248773.16835K562U2AF1
chr204312982043129940-CDS,intron-Distal4.4022313.77405K562SND1
chr204312972143129776-CDS,intron-Distal3.628706.34839HepG2YBX3
chr204312972243129783-CDS,intron-Distal5.151137.09854K562SND1
chr204313546543135508-CDS,intron-Distal,intron-Proximal4.850546.86924K562LIN28B
chr204313552343135631-CDS,intron-Distal3.9356410.50312K562SND1
chr204313262443132637-CDS,intron-Distal,intron-Proximal4.227134.24775K562IGF2BP2
chr204313992943139975-CDS,intron-Distal,intron-Proximal5.122847.52455K562SND1
chr204313344943133479-CDS,intron-Distal3.784425.74223HepG2PCBP2
chr204313251043132602-CDS,intron-Distal4.5695910.38043K562IGF2BP2
chr204313344043133485-CDS,intron-Distal,intron-Proximal4.523776.50958HepG2IGF2BP3
chr204312993843129992-CDS,intron-Distal,intron-Proximal5.592059.77805HepG2SF3B4
chr204312899943129053-CDS,intron-Distal3.032114.35865K562YBX3
chr204312967843129740-CDS,intron-Distal,intron-Proximal3.837777.47181HepG2PRPF8
chr204313861843138656-CDS,intron-Distal3.071293.35239HepG2IGF2BP1
chr204313552643135612-CDS,intron-Distal3.292583.24714K562IGF2BP1
chr204313252643132602-CDS,intron-Distal3.705548.10554HepG2IGF2BP1
chr204313245443132484-CDS,intron-Distal,intron-Proximal4.750224.72597K562SND1
chr204313553143135596-CDS,intron-Distal4.849986.83585HepG2IGF2BP1
chr204313351943133532-CDS,intron-Distal4.048983.98564K562LIN28B
chr204313254043132630-CDS,intron-Distal3.171808.40720K562SND1
chr204313344043133488-CDS,intron-Distal,intron-Proximal4.3506910.80373K562IGF2BP2
chr204313546743135497-CDS,intron-Distal,intron-Proximal4.836175.79813HepG2LIN28B
chr204312981943129925-CDS,intron-Distal3.5920910.83180K562LIN28B
chr204313237843132492-CDS,intron-Distal,intron-Proximal3.010924.36251K562PRPF8
chr204313242443132481-CDS,intron-Distal,intron-Proximal4.972745.68502HepG2PRPF8
chr204312971343129721-CDS,intron-Distal,intron-Proximal3.797223.09919HepG2YBX3
chr204314414643144216-intron-Distal4.664495.41525HepG2PCBP2
chr204314031243140382-intron-Distal3.827013.20552HepG2KHSRP
chr204313001343130126-intron-Distal,intron-Proximal3.129583.52315K562HNRNPA1
chr204313875543138843-intron-Distal,intron-Proximal3.009273.55116K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SERINC3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SERINC3 is not available on ENCORE database.

  • 92 RBPs can affect the levels of SERINC3.  








The Knockdown/knockout RNA-Seq assay for SERINC3 is not available on ENCORE database.





92 RBPs can affect the gene expression of SERINC3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SERINC3ENSG00000132824.94942.699503691.369300.421005.076703.66590HepG2AATF
SERINC3ENSG00000132824.912130.457609828.562700.303502.055601.58950HepG2AKAP1
SERINC3ENSG00000132824.99044.202406303.903200.5206016.5570015.13110HepG2AUH
SERINC3ENSG00000132824.92222.797103813.72980-0.778808.867107.14630HepG2BCCIP
SERINC3ENSG00000132824.97476.656605113.418800.548008.484607.50600HepG2BOP1
SERINC3ENSG00000132824.97485.220505112.107900.5500011.273509.88760HepG2CALR
SERINC3ENSG00000132824.99394.391107726.263600.281902.263801.56000HepG2CIRBP
SERINC3ENSG00000132824.98352.871206387.062300.387001.975901.33430HepG2CNOT7
SERINC3ENSG00000132824.95809.586304694.529400.307402.640001.96700HepG2CPSF6
SERINC3ENSG00000132824.96535.324205164.711800.339504.334702.96620HepG2CPSF7
SERINC3ENSG00000132824.91715.597202356.09150-0.457703.132601.99320HepG2CSTF2
SERINC3ENSG00000132824.92946.726404537.51560-0.6228015.8976013.54640HepG2DDX1
SERINC3ENSG00000132824.91559.474504073.69670-1.3853043.9715041.75500HepG2DDX21
SERINC3ENSG00000132824.94724.730403985.599200.245302.314001.48570HepG2DDX24
SERINC3ENSG00000132824.92072.819502840.98900-0.454803.587501.99870HepG2DDX28
SERINC3ENSG00000132824.97354.907705330.939300.464202.286401.40060HepG2DDX59
SERINC3ENSG00000132824.95504.714104449.288100.307004.820303.91500HepG2DNAJC21
SERINC3ENSG00000132824.93669.633104529.57630-0.303702.428501.56200HepG2EEF2
SERINC3ENSG00000132824.95376.028003750.580500.519304.293702.90090HepG2AGO1
SERINC3ENSG00000132824.94728.606603676.942200.362803.330702.34390HepG2EIF3D
SERINC3ENSG00000132824.95575.363908365.68770-0.585404.941604.03920HepG2EIF4B
SERINC3ENSG00000132824.910056.387607237.527800.4744014.4195013.21820HepG2ETF1
SERINC3ENSG00000132824.98705.547506331.611600.459304.427003.47000HepG2FIP1L1
SERINC3ENSG00000132824.95980.906908669.10830-0.535506.378905.35160HepG2FXR1
SERINC3ENSG00000132824.96067.919408041.92330-0.406303.480102.73770HepG2G3BP1
SERINC3ENSG00000132824.96208.395108537.46170-0.459605.049103.83510HepG2G3BP2
SERINC3ENSG00000132824.92380.461803273.82300-0.459705.021503.81310HepG2GEMIN5
SERINC3ENSG00000132824.93112.046805321.97750-0.774107.980606.93160HepG2GPKOW
SERINC3ENSG00000132824.95589.615304540.094600.299905.597004.26070HepG2HDGF
SERINC3ENSG00000132824.95568.577904933.462200.174602.269401.61540HepG2HNRNPF
SERINC3ENSG00000132824.94658.038205470.09890-0.231805.031004.14380HepG2HNRNPL
SERINC3ENSG00000132824.97817.430205078.828400.622109.191208.11790HepG2HNRNPLL
SERINC3ENSG00000132824.93252.462204369.14440-0.425805.521004.22510HepG2HNRNPM
SERINC3ENSG00000132824.94099.345904963.39630-0.275904.915904.12750HepG2HNRNPU
SERINC3ENSG00000132824.94609.002805069.94390-0.137501.946201.31780HepG2ILF2
SERINC3ENSG00000132824.96049.812808222.07240-0.442603.259702.16020HepG2KHSRP
SERINC3ENSG00000132824.94957.532104347.089800.189503.275802.16710HepG2KIF1C
SERINC3ENSG00000132824.92295.852104520.98120-0.977609.762007.61590HepG2LIN28B
SERINC3ENSG00000132824.95524.997808672.13440-0.650408.680507.53340HepG2MAGOH
SERINC3ENSG00000132824.95774.970808720.68800-0.594606.620205.67650HepG2MATR3
SERINC3ENSG00000132824.95527.232604303.547900.360904.366702.84190HepG2NAA15
SERINC3ENSG00000132824.95761.474008926.12270-0.631607.873006.82940HepG2NCBP2
SERINC3ENSG00000132824.95821.975104503.089300.370502.548201.82860HepG2NSUN2
SERINC3ENSG00000132824.98008.551305837.555000.456102.319201.52050HepG2PABPC1
SERINC3ENSG00000132824.96221.592407949.35690-0.353602.917602.17720HepG2PABPC4
SERINC3ENSG00000132824.95631.715507869.04550-0.4826014.3571013.15100HepG2PCBP1
SERINC3ENSG00000132824.92108.140404426.95180-1.0703043.2448040.54880HepG2PPIL4
SERINC3ENSG00000132824.93643.143702893.222900.332403.014602.17420HepG2PRPF8
SERINC3ENSG00000132824.96462.966508007.20660-0.309106.247205.49000HepG2PTBP1
SERINC3ENSG00000132824.94227.028406033.75590-0.5134022.3500020.99840HepG2PUM1
SERINC3ENSG00000132824.97377.681906029.390400.291103.664502.89800HepG2PUM2
SERINC3ENSG00000132824.96019.869704843.600300.313607.153106.24100HepG2PUS1
SERINC3ENSG00000132824.93214.665004791.88570-0.575903.332202.56150HepG2RAVER1
SERINC3ENSG00000132824.98590.959206599.837800.380306.017104.81240HepG2RBM15
SERINC3ENSG00000132824.99149.093906049.275000.5968018.0609016.97080HepG2RBM22
SERINC3ENSG00000132824.94391.173608911.12040-1.0210059.0513057.32740HepG2NELFE
SERINC3ENSG00000132824.94761.430408299.73670-0.8017038.5278036.74110HepG2RECQL
SERINC3ENSG00000132824.97100.644005314.333700.418003.789403.01010HepG2RPLP0
SERINC3ENSG00000132824.94810.533706412.90110-0.414802.744301.94820HepG2RPS3A
SERINC3ENSG00000132824.94672.596802862.069700.707109.370708.04640HepG2RRP9
SERINC3ENSG00000132824.95166.744504420.120000.225103.484002.77640HepG2SAFB2
SERINC3ENSG00000132824.96926.854805027.246100.462306.010105.00350HepG2SF3B1
SERINC3ENSG00000132824.95970.202508336.25120-0.4816014.6831013.48530HepG2SF3B4
SERINC3ENSG00000132824.93920.001705154.60020-0.3950013.4258012.17240HepG2SMN1
SERINC3ENSG00000132824.99752.798505593.617700.801904.910303.85730HepG2SNRNP70
SERINC3ENSG00000132824.910631.969206832.505900.6378031.1043029.89830HepG2SRFBP1
SERINC3ENSG00000132824.96648.622908701.35760-0.3882011.1254010.31500HepG2SRSF1
SERINC3ENSG00000132824.96025.708304846.914200.314006.208705.23230HepG2SRSF7
SERINC3ENSG00000132824.97803.817907079.117800.140501.878901.40830HepG2SRSF9
SERINC3ENSG00000132824.96777.974704478.046400.597904.583603.02450HepG2SUB1
SERINC3ENSG00000132824.94683.755906382.51270-0.4465015.3104014.03910HepG2SUCLG1
SERINC3ENSG00000132824.95848.424804276.230500.451606.729105.30660HepG2SUPT6H
SERINC3ENSG00000132824.95890.393403732.837100.658008.745707.65360HepG2SUPV3L1
SERINC3ENSG00000132824.96607.557704949.323700.416804.939704.01140HepG2TARDBP
SERINC3ENSG00000132824.93406.491302502.121900.445003.951802.78480HepG2TFIP11
SERINC3ENSG00000132824.97655.303805416.828700.498906.510305.56270HepG2U2AF1
SERINC3ENSG00000132824.92734.360802205.249800.310202.524601.80000HepG2UCHL5
SERINC3ENSG00000132824.94763.897005603.04540-0.234103.993903.17850HepG2UPF1
SERINC3ENSG00000132824.93907.405005409.50730-0.4693013.5395012.36360HepG2UTP3
SERINC3ENSG00000132824.92658.035103674.56230-0.467204.112103.23640HepG2XRN2
SERINC3ENSG00000132824.95371.426304183.002100.360709.980508.83780HepG2ZC3H8
SERINC3ENSG00000132824.98612.695306162.265500.4829021.8210020.64380HepG2ZNF622
SERINC3ENSG00000132824.92902.000203575.72370-0.301202.519801.95380K562AQR
SERINC3ENSG00000132824.91461.134602156.63140-0.5617010.689908.07040K562BCCIP
SERINC3ENSG00000132824.93094.201002404.938500.363503.066402.14600K562BOP1
SERINC3ENSG00000132824.93022.512903750.60530-0.311404.888603.38910K562CPEB4
SERINC3ENSG00000132824.92956.897903880.64030-0.392207.722406.70890K562DDX47
SERINC3ENSG00000132824.92950.975302407.420300.293603.928003.09420K562EIF2S2
SERINC3ENSG00000132824.91481.395602127.15490-0.522008.276906.90610K562EIF3G
SERINC3ENSG00000132824.91699.093602151.09410-0.340302.979002.12870K562EIF4A3
SERINC3ENSG00000132824.91835.196102237.05670-0.285703.346302.68970K562FXR1
SERINC3ENSG00000132824.91964.494902441.55570-0.313602.100001.40430K562GPKOW
SERINC3ENSG00000132824.92404.632303208.09330-0.415905.243604.19780K562GRSF1
SERINC3ENSG00000132824.91384.061402032.61630-0.554405.605903.38570K562LIN28B
SERINC3ENSG00000132824.92202.406803057.46990-0.473306.360605.06320K562MAGOH
SERINC3ENSG00000132824.92964.727404561.60400-0.621609.397907.40080K562MSI2
SERINC3ENSG00000132824.91861.091202733.45010-0.5546014.3427012.67440K562MTPAP
SERINC3ENSG00000132824.92252.753902720.44360-0.272202.340801.44560K562PCBP2
SERINC3ENSG00000132824.92408.409202970.50200-0.302603.108002.40890K562PTBP1
SERINC3ENSG00000132824.93994.592704966.50770-0.314204.090502.77300K562PUM1
SERINC3ENSG00000132824.95677.181904240.412000.420904.878404.18350K562PUS1
SERINC3ENSG00000132824.92256.353702848.51390-0.336203.055102.16600K562RBM22
SERINC3ENSG00000132824.92292.720302947.25420-0.362303.178002.41950K562TARDBP
SERINC3ENSG00000132824.92844.909203220.16600-0.178802.024401.40410K562UPF1
SERINC3ENSG00000132824.92427.820903244.08220-0.418102.564101.41320K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SERINC3 is not available on ENCORE database.





6 RBPs can affect the splicing of SERINC3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESERINC3ENSG00000132824.9chr20-431334414313353243132455431326364313546743135637-0.142000.000000.00000excludedK562AQR
A3SSSERINC3ENSG00000132824.9chr20-4314251943142728431425194314268143150553431507500.064000.000000.00000longerK562AQR
A3SSSERINC3ENSG00000132824.9chr20-4314251943142728431425194314268143150553431507500.083000.000000.00000longerHepG2U2AF1
A3SSSERINC3ENSG00000132824.9chr20-4314251943142728431425194314268143150553431507500.188000.000030.00275longerK562U2AF1
MXESERINC3ENSG00000132824.9chr20-4313546743135637431385314313866943132455431326364313992943140009-0.060000.006830.078912includedK562U2AF1
MXESERINC3ENSG00000132824.9chr20-4313344143133532431385314313866943132455431326364313992943140009-0.091000.003820.054072includedK562U2AF1
MXESERINC3ENSG00000132824.9chr20-43133441431335324313546743135681431324554313263643138531431386690.132000.000000.000001includedK562AQR
MXESERINC3ENSG00000132824.9chr20-43133441431335324313546743135637431324554313263643138531431386690.100000.012940.078011includedK562AQR
MXESERINC3ENSG00000132824.9chr20-4313546743135637431385314313866943132455431326364313992943140009-0.204000.000000.000002includedK562AQR
MXESERINC3ENSG00000132824.9chr20-4313344143133532431354674313563743132455431326364313853143138669-0.141000.000010.000652includedHepG2XRN2
MXESERINC3ENSG00000132824.9chr20-43138531431386694313992943140009431354674313563743141441431416350.123000.000590.088051includedK562PUM2
MXESERINC3ENSG00000132824.9chr20-4313344143133532431354674313563743132455431326364313853143138669-0.087000.000370.073202includedK562PUM2
MXESERINC3ENSG00000132824.9chr20-4313546743135637431385314313866943132455431326364313992943140009-0.127000.002180.037652includedK562HNRNPC
MXESERINC3ENSG00000132824.9chr20-4313344143133532431354674313563743132455431326364313853143138669-0.250000.002670.042542includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SERINC3 is not avaliable on ENCORE database.