RNPEPL1

General Information

Gene Name       : RNPEPL1
Gene ID             : ENSG00000142327.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RNPEPL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNPEPL1ENSG00000142327.120.684.542.61ENCSR000AEF
HepG2RNPEPL1ENSG00000142327.1228.165.3016.73ENCSR985KAT
K562RNPEPL1ENSG00000142327.1215.423.809.61ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNPEPL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNPEPL1 RNA is bound by 13 proteins.  







eCLIP assay for RNPEPL1 is not avaliable on ENCORE database.





13 proteins are bound to RNPEPL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2241513958241514036+3'-UTR,CDS,intron-Proximal5.448788.85296HepG2PPIG
chr2241517667241517747+3'-UTR3.182564.74960HepG2UPF1
chr2241517841241517940+3'-UTR4.004145.24353K562UPF1
chr2241518015241518091+3'-UTR3.539694.27354HepG2UPF1
chr2241517860241517901+3'-UTR4.543803.92497HepG2UPF1
chr2241517475241517571+3'-UTR4.383228.55060HepG2UPF1
chr2241517571241517633+3'-UTR4.302724.49605HepG2UPF1
chr2241508189241508234+5'-UTR,intron-Distal4.4414810.34792HepG2DDX3X
chr2241508110241508175+5'-UTR,intron-Distal3.579458.94209HepG2DDX3X
chr2241511876241511979+5'-UTR,intron-Distal3.409865.04794HepG2YBX3
chr2241511908241511939+5'-UTR,intron-Distal3.288776.82132K562YBX3
chr2241511953241512028+5'-UTR,intron-Distal,intron-Proximal3.293068.54207HepG2PRPF8
chr2241511790241511842+5'-UTR,intron-Distal,intron-Proximal4.908235.40008K562SF3B4
chr2241511887241511908+5'-UTR,intron-Distal3.451355.32768K562YBX3
chr2241508279241508357+5'-UTR,intron-Distal4.565704.01285K562GEMIN5
chr2241512600241512673+CDS,intron-Distal3.460415.30777HepG2PPIG
chr2241513117241513229+CDS,intron-Distal,intron-Proximal4.4954011.59516HepG2EFTUD2
chr2241513098241513231+CDS,intron-Distal,intron-Proximal3.034294.19099HepG2PRPF4
chr2241513757241513818+CDS,intron-Distal,intron-Proximal3.9245811.87912HepG2PRPF8
chr2241513050241513212+CDS,intron-Distal,intron-Proximal3.811745.63456HepG2RBFOX2
chr2241513321241513386+intron-Distal,intron-Proximal3.241533.27165HepG2RBFOX2
chr2241512478241512521+intron-Distal,intron-Proximal4.938567.57220HepG2SF3B4
chr2241508003241508081+intron-Distal4.5068420.70863HepG2DDX3X
chr2241509733241509779+intron-Distal4.043174.10339HepG2CSTF2T
chr2241510769241510816+intron-Distal3.149323.27165HepG2RBFOX2
chr2241507983241508039+intron-Distal3.255664.08171K562YBX3
chr2241513308241513365+intron-Distal,intron-Proximal4.353344.98250K562AQR
chr2241507990241508099+intron-Distal3.325273.63807HepG2UPF1
chr2241511753241511819+intron-Distal,intron-Proximal4.778978.03431HepG2SF3A3
chr2241513422241513509+intron-Distal,intron-Proximal3.539333.76326HepG2RBFOX2
chr2241511759241511840+intron-Distal,intron-Proximal4.799976.05374HepG2SF3B4
chr2241507927241508033+intron-Distal5.109953.69821K562DDX3X
chr2241513138241513185+intron-Distal,intron-Proximal3.748846.24865HepG2SF3B4
chr2241507911241507987+intron-Distal5.5849518.21641HepG2DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNPEPL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNPEPL1 is not available on ENCORE database.

  • 105 RBPs can affect the levels of RNPEPL1.  








The Knockdown/knockout RNA-Seq assay for RNPEPL1 is not available on ENCORE database.





105 RBPs can affect the gene expression of RNPEPL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNPEPL1ENSG00000142327.72076.191901783.804500.218901.895701.30790HepG2AUH
RNPEPL1ENSG00000142327.7918.49700426.399601.1070013.2129012.03820HepG2BOP1
RNPEPL1ENSG00000142327.7545.53460390.595100.481902.557801.58290HepG2YBX3
RNPEPL1ENSG00000142327.71409.48610727.520000.9540024.1911022.67720HepG2CELF1
RNPEPL1ENSG00000142327.71121.86380782.202100.520209.093907.87330HepG2DAZAP1
RNPEPL1ENSG00000142327.7606.56520391.134500.632904.523903.06280HepG2DDX1
RNPEPL1ENSG00000142327.7394.42990623.73070-0.661202.184101.38280HepG2DDX24
RNPEPL1ENSG00000142327.71219.80670580.802601.070402.636701.87930HepG2DDX55
RNPEPL1ENSG00000142327.72795.520301454.883500.942102.836202.21150HepG2DDX6
RNPEPL1ENSG00000142327.7883.74230383.527301.204209.775508.51960HepG2DNAJC21
RNPEPL1ENSG00000142327.7954.58440380.151901.3282041.2292038.98580HepG2DNAJC2
RNPEPL1ENSG00000142327.72636.620001397.412400.915803.507402.84430HepG2EIF2S1
RNPEPL1ENSG00000142327.71141.99480739.270600.627306.848105.59460HepG2EIF4G2
RNPEPL1ENSG00000142327.7851.616101346.60610-0.661107.060905.84100HepG2FUBP3
RNPEPL1ENSG00000142327.71383.25060648.574001.0926010.801508.04620HepG2HNRNPA0
RNPEPL1ENSG00000142327.7634.33600387.201700.712101.865101.32260HepG2HNRNPA1
RNPEPL1ENSG00000142327.71150.12560660.878800.7992016.4164014.86210HepG2HNRNPF
RNPEPL1ENSG00000142327.71056.55370712.507900.5683010.185008.96990HepG2HNRNPL
RNPEPL1ENSG00000142327.7665.02170427.846300.636207.470606.51250HepG2HNRNPU
RNPEPL1ENSG00000142327.71189.32160650.775900.8698015.3374013.78200HepG2IGF2BP1
RNPEPL1ENSG00000142327.7730.83400437.030200.7417013.1080011.64460HepG2ILF2
RNPEPL1ENSG00000142327.71234.34750730.721800.756303.535702.15910HepG2KHDRBS1
RNPEPL1ENSG00000142327.71534.462601320.710200.216302.509801.53660HepG2KIF1C
RNPEPL1ENSG00000142327.71678.757601083.853600.631104.757203.65870HepG2LARP4
RNPEPL1ENSG00000142327.7848.75960504.048700.751702.683501.56670HepG2LARP7
RNPEPL1ENSG00000142327.71435.54820775.633200.888107.561006.31710HepG2NOL12
RNPEPL1ENSG00000142327.7694.64260295.877201.231203.224301.65890HepG2NOLC1
RNPEPL1ENSG00000142327.71192.22430533.991701.158702.938001.80890HepG2NONO
RNPEPL1ENSG00000142327.7560.36700423.489800.403902.550501.73430HepG2PARN
RNPEPL1ENSG00000142327.71027.98840381.604001.4296017.6608015.91160HepG2PPIL4
RNPEPL1ENSG00000142327.7571.88240889.24930-0.636903.282202.44660HepG2PRPF4
RNPEPL1ENSG00000142327.71966.674001552.587900.341004.999404.30870HepG2PTBP1
RNPEPL1ENSG00000142327.72056.06200740.426601.4734027.7041026.08640HepG2PUF60
RNPEPL1ENSG00000142327.71563.25450786.015100.9918036.4882034.83520HepG2PUM1
RNPEPL1ENSG00000142327.71104.90760785.428800.492302.721202.05520HepG2PUM2
RNPEPL1ENSG00000142327.7702.475401681.27280-1.2590013.6546012.41830HepG2QKI
RNPEPL1ENSG00000142327.71074.61170607.859000.821903.047502.00580HepG2RBM27
RNPEPL1ENSG00000142327.7915.30800493.613900.890803.775902.53470HepG2RCC2
RNPEPL1ENSG00000142327.71253.836401727.79620-0.462604.972304.28320HepG2NELFE
RNPEPL1ENSG00000142327.71044.63670711.944400.553101.987401.39750HepG2RPLP0
RNPEPL1ENSG00000142327.71041.66500560.505600.894003.993503.04100HepG2RPS2
RNPEPL1ENSG00000142327.71289.38220769.964600.743703.619902.70530HepG2RPS3A
RNPEPL1ENSG00000142327.71031.36170572.263800.849703.034201.90730HepG2RPS5
RNPEPL1ENSG00000142327.71035.45040381.013801.4422046.1398044.00370HepG2SAFB2
RNPEPL1ENSG00000142327.71501.42300709.993901.0804010.379309.15920HepG2SLBP
RNPEPL1ENSG00000142327.7862.22590444.322700.9564021.2493019.72020HepG2SMN1
RNPEPL1ENSG00000142327.71221.73760533.552301.195104.340903.12360HepG2SMNDC1
RNPEPL1ENSG00000142327.7200.52440466.24590-1.217304.041403.08860HepG2SNRNP70
RNPEPL1ENSG00000142327.71475.550901933.45180-0.389905.783605.13280HepG2SRFBP1
RNPEPL1ENSG00000142327.7541.401101687.10130-1.6398042.8768041.50480HepG2SRSF1
RNPEPL1ENSG00000142327.71015.15790731.086900.473506.411605.51300HepG2SRSF5
RNPEPL1ENSG00000142327.71169.27860649.295300.848606.448405.45700HepG2SRSF7
RNPEPL1ENSG00000142327.7844.230101372.61130-0.7012012.4141011.39250HepG2SRSF9
RNPEPL1ENSG00000142327.71297.651201678.59820-0.371405.598504.91860HepG2SSB
RNPEPL1ENSG00000142327.71300.59140670.107600.956607.455205.57990HepG2STIP1
RNPEPL1ENSG00000142327.71385.65510831.427100.7368018.3588016.98380HepG2SUCLG1
RNPEPL1ENSG00000142327.71240.63460888.046100.482302.217901.37270HepG2SUPT6H
RNPEPL1ENSG00000142327.7451.424201516.64040-1.7483032.8056031.15190HepG2TAF15
RNPEPL1ENSG00000142327.7691.05380412.869900.743002.422001.73730HepG2TARDBP
RNPEPL1ENSG00000142327.7824.14140387.270501.089502.943001.91500HepG2TFIP11
RNPEPL1ENSG00000142327.71357.95550419.449901.6948068.5620066.30340HepG2TRIM56
RNPEPL1ENSG00000142327.71036.00980723.397400.518102.704601.84140HepG2TUFM
RNPEPL1ENSG00000142327.7644.014201125.41480-0.805302.528001.92520HepG2U2AF1
RNPEPL1ENSG00000142327.71998.57160765.725801.384008.351506.86570HepG2UBE2L3
RNPEPL1ENSG00000142327.7625.42120341.286600.873701.954301.31640HepG2UCHL5
RNPEPL1ENSG00000142327.71346.08400689.711700.964607.274605.50160HepG2XPO5
RNPEPL1ENSG00000142327.71729.305101257.754200.459209.935209.05950HepG2ZNF622
RNPEPL1ENSG00000142327.7665.76320914.54780-0.458003.019302.41130K562AQR
RNPEPL1ENSG00000142327.7510.00700372.925000.451503.129201.71250K562BCCIP
RNPEPL1ENSG00000142327.7572.37590360.424500.667207.042705.48350K562BCLAF1
RNPEPL1ENSG00000142327.7384.86570267.190400.526402.661701.40870K562CIRBP
RNPEPL1ENSG00000142327.7949.06600682.904700.474705.225603.67340K562CPEB4
RNPEPL1ENSG00000142327.7275.30450167.886200.713404.280203.30380K562CPSF6
RNPEPL1ENSG00000142327.7483.42180273.435800.822007.978906.05030K562CSTF2
RNPEPL1ENSG00000142327.7746.06470575.013300.375602.751701.71290K562DDX3X
RNPEPL1ENSG00000142327.7840.70590706.478300.250901.915001.35430K562DDX47
RNPEPL1ENSG00000142327.7757.14340582.967800.377103.169501.74510K562DDX6
RNPEPL1ENSG00000142327.7517.07750318.197700.700402.516301.64850K562EFTUD2
RNPEPL1ENSG00000142327.71068.27820619.580300.785809.755208.52960K562EIF2S2
RNPEPL1ENSG00000142327.7211.94320144.841000.549102.152201.44390K562EIF3G
RNPEPL1ENSG00000142327.7493.23350281.322200.809905.023302.39550K562EIF3H
RNPEPL1ENSG00000142327.7712.35660540.946700.397003.401202.09750K562EIF4B
RNPEPL1ENSG00000142327.7556.90860318.939900.804105.576104.34810K562FIP1L1
RNPEPL1ENSG00000142327.7483.26140624.71340-0.370402.950802.32880K562FXR1
RNPEPL1ENSG00000142327.715.6352091.24850-2.545009.200407.75900K562G3BP2
RNPEPL1ENSG00000142327.7249.57400160.287700.638702.077701.38570K562GPKOW
RNPEPL1ENSG00000142327.7644.30210432.340300.575502.561701.79290K562HSPD1
RNPEPL1ENSG00000142327.7569.35840249.514901.190102.995401.91380K562IGF2BP2
RNPEPL1ENSG00000142327.7398.16670253.701800.650104.448302.86030K562IGF2BP3
RNPEPL1ENSG00000142327.7374.48600262.011100.515202.631601.81160K562MAGOH
RNPEPL1ENSG00000142327.7437.75440261.446200.743502.963602.00450K562MATR3
RNPEPL1ENSG00000142327.7244.55250156.459700.644303.155302.21670K562METAP2
RNPEPL1ENSG00000142327.71016.10550775.687400.389405.174704.19930K562NSUN2
RNPEPL1ENSG00000142327.7544.03620382.601800.507802.813101.37850K562NUSAP1
RNPEPL1ENSG00000142327.7675.09950362.136500.898505.977904.69500K562PPIG
RNPEPL1ENSG00000142327.7491.93990348.277400.498102.808301.89620K562PSIP1
RNPEPL1ENSG00000142327.7427.17300254.576600.746606.727205.72870K562PTBP1
RNPEPL1ENSG00000142327.7898.300201266.08040-0.495102.913701.81590K562PUM1
RNPEPL1ENSG00000142327.7445.98740317.916100.488303.037401.99410K562RCC2
RNPEPL1ENSG00000142327.7358.56270207.485400.789104.398803.09880K562RPS3
RNPEPL1ENSG00000142327.7768.72010445.764300.786103.419301.91320K562SFPQ
RNPEPL1ENSG00000142327.7477.73550301.359600.664604.083502.76300K562SRFBP1
RNPEPL1ENSG00000142327.7403.52240249.594500.693002.964202.23500K562SRSF1
RNPEPL1ENSG00000142327.7435.46530200.252501.1206010.589708.41160K562SRSF4
RNPEPL1ENSG00000142327.7425.19400235.784200.850606.138604.46730K562SRSF5
RNPEPL1ENSG00000142327.7362.33500507.91830-0.487302.070101.35980K562SYNCRIP
RNPEPL1ENSG00000142327.7603.09810252.552901.2557016.5608014.54480K562TARDBP
RNPEPL1ENSG00000142327.7559.19010243.629701.198508.763307.19170K562TIA1
RNPEPL1ENSG00000142327.7414.40300239.198800.792703.427802.18570K562TRA2A
RNPEPL1ENSG00000142327.7543.11030356.033900.609104.669103.36640K562TRIM56
RNPEPL1ENSG00000142327.737.2669088.36340-1.245602.353501.35600K562U2AF1
RNPEPL1ENSG00000142327.726.6169091.28830-1.778107.487206.16560K562U2AF2
RNPEPL1ENSG00000142327.71110.26790822.476200.432805.767604.77380K562UPF1
RNPEPL1ENSG00000142327.7610.04330731.82140-0.262602.171401.41490K562WDR43
RNPEPL1ENSG00000142327.7604.00350323.172700.902202.853501.62210K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNPEPL1 is not available on ENCORE database.





16 RBPs can affect the splicing of RNPEPL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNPEPL1ENSG00000142327.7chr2+241513191241513308241512544241512678241513529241513765-0.205000.000870.09760excludedHepG2HNRNPM
SERNPEPL1ENSG00000142327.7chr2+2415131912415133082415125262415126782415135292415137650.536000.002410.02941includedHepG2U2AF2
SERNPEPL1ENSG00000142327.7chr2+2415131912415133082415125442415126782415135292415137650.106000.000330.02667includedHepG2AKAP1
SERNPEPL1ENSG00000142327.7chr2+2415131912415133082415125262415126782415135292415137650.523000.001040.04705includedHepG2SFPQ
SERNPEPL1ENSG00000142327.7chr2+2415131912415133082415125442415126782415135292415137650.098000.000170.02061includedHepG2DDX6
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.111000.001070.01440includedHepG2SF3A3
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.134000.002830.03380includedK562PRPF8
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.117000.000850.01012includedHepG2U2AF1
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.053000.000200.00384includedHepG2NCBP2
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.073000.000060.00081includedHepG2SF3B4
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.053000.001600.01808includedHepG2RBM22
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.101000.000650.00459includedK562AQR
RIRNPEPL1ENSG00000142327.7chr2+2415144462415150272415144462415145592415149182415150270.118000.000590.02640includedHepG2XRN2
MXERNPEPL1ENSG00000142327.7chr2+2415131912415133082415135292415137652415125262415126782415139312415140450.240000.000000.000001includedHepG2MATR3
MXERNPEPL1ENSG00000142327.7chr2+241513191241513308241513529241513765241512526241512678241513931241514045-0.161000.002740.047442includedHepG2FTO
MXERNPEPL1ENSG00000142327.7chr2+2415131912415133082415135292415137652415125262415126782415139312415140450.177000.000390.024741includedHepG2XPO5
MXERNPEPL1ENSG00000142327.7chr2+2415131912415133082415135292415137652415125262415126782415139312415140450.119000.013040.067141includedHepG2U2AF2
MXERNPEPL1ENSG00000142327.7chr2+2415131912415133082415135292415137652415125262415126782415139312415140450.169000.000020.001521includedHepG2NCBP2
MXERNPEPL1ENSG00000142327.7chr2+2415131912415133082415135292415137652415125262415126782415139312415140450.142000.000420.030691includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNPEPL1 is not avaliable on ENCORE database.