RNF20

General Information

Gene Name       : RNF20
Gene ID             : ENSG00000155827.11
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RNF20)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNF20ENSG00000155827.1121.2218.8220.02ENCSR000AEF
HepG2RNF20ENSG00000155827.1122.5235.0928.80ENCSR985KAT
K562RNF20ENSG00000155827.1114.0514.8414.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RNF20Ribo-STAMP-293TshRNARNF20-BGRSLV02-49,RNF20-BGRSLV02-50NT-BGRSLV02-1,NT-BGRSLV02-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNF20 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNF20 RNA is bound by 5 proteins.  







eCLIP assay for RNF20 is not avaliable on ENCORE database.





5 proteins are bound to RNF20 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9104319689104319729+CDS3.406383.68471HepG2BCLAF1
chr9104316268104316321+CDS,intron-Proximal3.632623.05298K562GRWD1
chr9104314676104314720+CDS3.344553.95937K562UCHL5
chr9104319666104319713+CDS4.559625.14565K562UCHL5
chr9104319666104319749+CDS3.956084.06501K562GRWD1
chr9104314839104314953+CDS4.992747.31591K562UCHL5
chr9104317062104317126+CDS,intron-Proximal3.235933.84932K562ZNF800
chr9104319664104319719+CDS,intron-Proximal3.463083.36945K562ZNF622
chr9104317013104317127+CDS,intron-Proximal5.153328.53277K562ZNF622
chr9104319660104319751+CDS,intron-Proximal3.672533.89440HepG2ZNF800
chr9104316306104316353+CDS4.491344.34038HepG2BCLAF1
chr9104302822104302846+CDS4.130113.38968HepG2BCLAF1
chr9104317102104317124+CDS4.255784.42734K562UCHL5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNF20 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNF20 is not available on ENCORE database.

  • 85 RBPs can affect the levels of RNF20.  








The Knockdown/knockout RNA-Seq assay for RNF20 is not available on ENCORE database.





85 RBPs can affect the gene expression of RNF20 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNF20ENSG00000155827.7930.333901160.69720-0.319203.770803.08190HepG2ACO1
RNF20ENSG00000155827.7850.091301135.49070-0.417602.151801.32940HepG2BCCIP
RNF20ENSG00000155827.7683.16710986.74450-0.530403.577602.56180HepG2BCLAF1
RNF20ENSG00000155827.7944.852301534.18030-0.699309.305908.28970HepG2BOP1
RNF20ENSG00000155827.71228.121401915.03570-0.640904.454603.20180HepG2CCAR1
RNF20ENSG00000155827.71021.304701408.46670-0.463704.179303.35010HepG2CPSF6
RNF20ENSG00000155827.7832.569701074.96990-0.368702.771401.66670HepG2CPSF7
RNF20ENSG00000155827.7471.80480701.51620-0.572304.336403.02250HepG2CSTF2
RNF20ENSG00000155827.71076.206001437.91870-0.418005.296004.46000HepG2CELF1
RNF20ENSG00000155827.71220.420501545.95890-0.341105.051304.09350HepG2DAZAP1
RNF20ENSG00000155827.7666.67910891.67620-0.419504.056102.67520HepG2DDX1
RNF20ENSG00000155827.71311.442501021.260400.360702.915402.22100HepG2DDX21
RNF20ENSG00000155827.71049.978301345.29750-0.357602.341701.76090HepG2DDX3X
RNF20ENSG00000155827.7431.764401116.37540-1.3705018.8218017.07070HepG2DDX55
RNF20ENSG00000155827.7629.746901155.76390-0.876009.314908.25390HepG2DDX6
RNF20ENSG00000155827.7577.26110874.34540-0.599007.851406.71620HepG2DNAJC21
RNF20ENSG00000155827.7601.12920866.59570-0.527708.009106.97060HepG2DNAJC2
RNF20ENSG00000155827.71562.309701227.658300.347702.127001.56350HepG2EIF4A3
RNF20ENSG00000155827.7909.724001195.41270-0.394002.035001.44020HepG2EIF4B
RNF20ENSG00000155827.7649.970201149.10810-0.822108.947407.78630HepG2G3BP1
RNF20ENSG00000155827.71287.030901596.62200-0.311001.852201.32150HepG2GPKOW
RNF20ENSG00000155827.7333.94210662.18210-0.987607.862606.00290HepG2GRSF1
RNF20ENSG00000155827.7744.840301108.04910-0.573009.587007.91000HepG2HDGF
RNF20ENSG00000155827.7622.435301420.85610-1.1908034.6843032.14240HepG2HNRNPA2B1
RNF20ENSG00000155827.71037.544801295.27440-0.320103.701602.88200HepG2HNRNPF
RNF20ENSG00000155827.7959.843201408.20270-0.553009.878708.68100HepG2HNRNPL
RNF20ENSG00000155827.7332.758101523.68440-2.1950058.7357056.44810HepG2HNRNPLL
RNF20ENSG00000155827.7553.85000909.38020-0.715408.501506.98470HepG2HNRNPM
RNF20ENSG00000155827.7993.456501275.47230-0.360503.482202.67750HepG2IGF2BP1
RNF20ENSG00000155827.7803.812301060.93620-0.400405.630804.19120HepG2KIF1C
RNF20ENSG00000155827.71486.126102021.10540-0.443602.993402.12790HepG2LARP4
RNF20ENSG00000155827.71007.791701275.50820-0.339902.019801.47440HepG2NCBP2
RNF20ENSG00000155827.71100.155001532.97800-0.478606.178505.04270HepG2NOL12
RNF20ENSG00000155827.7570.560001135.81240-0.9933012.8727011.34750HepG2PABPC4
RNF20ENSG00000155827.7840.476301173.25760-0.481207.005006.11190HepG2PCBP1
RNF20ENSG00000155827.71255.740901025.409600.292203.042802.23660HepG2PRPF4
RNF20ENSG00000155827.7939.297301463.40510-0.639708.291107.33280HepG2PUF60
RNF20ENSG00000155827.71292.251901553.52000-0.265703.213102.58480HepG2PUM1
RNF20ENSG00000155827.71206.580901552.35360-0.363503.588402.82960HepG2PUM2
RNF20ENSG00000155827.71027.285301182.22500-0.202701.825901.30320HepG2PUS1
RNF20ENSG00000155827.7838.561801154.34010-0.461101.960801.35730HepG2RAVER1
RNF20ENSG00000155827.7877.250201161.66960-0.405102.565901.61300HepG2RBM27
RNF20ENSG00000155827.71052.269101395.37490-0.407103.775902.99800HepG2RPLP0
RNF20ENSG00000155827.7800.045001133.65040-0.502802.762701.81970HepG2RPS10
RNF20ENSG00000155827.7719.64420868.61060-0.271402.428001.81800HepG2SAFB2
RNF20ENSG00000155827.71096.448601430.51030-0.383702.207501.60430HepG2SF3A3
RNF20ENSG00000155827.71234.435401508.15540-0.288902.070901.45430HepG2SF3B1
RNF20ENSG00000155827.7840.400201242.92160-0.564609.016008.04160HepG2SF3B4
RNF20ENSG00000155827.71140.127701403.28170-0.299603.644602.85790HepG2SLBP
RNF20ENSG00000155827.7794.709701176.21560-0.565703.869302.71990HepG2SMNDC1
RNF20ENSG00000155827.71219.805701678.08420-0.460202.513401.77060HepG2SNRNP70
RNF20ENSG00000155827.71720.656101297.353800.407306.490505.83990HepG2SRSF1
RNF20ENSG00000155827.71126.653701622.75530-0.526403.899802.68830HepG2SRSF3
RNF20ENSG00000155827.71202.955701444.96030-0.264402.615502.00270HepG2SRSF5
RNF20ENSG00000155827.7867.763101272.57510-0.552409.265108.12110HepG2SRSF7
RNF20ENSG00000155827.7634.674101055.47740-0.7338014.3618013.28140HepG2SRSF9
RNF20ENSG00000155827.71875.744801490.181100.331905.002004.35190HepG2SSB
RNF20ENSG00000155827.7919.770701485.08000-0.691208.623307.44320HepG2TARDBP
RNF20ENSG00000155827.7550.45330744.98510-0.436602.475801.52650HepG2TFIP11
RNF20ENSG00000155827.7625.25770956.21840-0.612909.973609.00440HepG2TRIM56
RNF20ENSG00000155827.71053.538301429.76780-0.440504.481003.33840HepG2TUFM
RNF20ENSG00000155827.71128.428501513.44130-0.423502.927502.06760HepG2UBE2L3
RNF20ENSG00000155827.7350.05250656.59560-0.907408.950307.58140HepG2UCHL5
RNF20ENSG00000155827.7832.980001268.64420-0.6069011.6616010.40720HepG2UPF1
RNF20ENSG00000155827.71072.646701303.98670-0.281802.790301.74000HepG2UTP18
RNF20ENSG00000155827.7901.198301395.26540-0.6306015.1410014.11690HepG2ZNF622
RNF20ENSG00000155827.71379.732301189.727500.213702.008401.50990K562AGGF1
RNF20ENSG00000155827.7630.60690781.66130-0.309802.491001.58280K562BCLAF1
RNF20ENSG00000155827.7427.16120593.00630-0.473303.344802.16550K562CSTF2
RNF20ENSG00000155827.71588.259502087.57930-0.394404.428403.18750K562CELF1
RNF20ENSG00000155827.71611.763601385.181700.218502.229801.63470K562DDX47
RNF20ENSG00000155827.7482.79100753.61260-0.642404.214402.60180K562EEF2
RNF20ENSG00000155827.71042.37820791.458400.397203.757101.87410K562FASTKD2
RNF20ENSG00000155827.7893.44590750.224600.252001.898201.37830K562FXR1
RNF20ENSG00000155827.7712.68390933.39610-0.389202.807902.00720K562GPKOW
RNF20ENSG00000155827.7958.975001451.65440-0.598107.339306.09290K562GRSF1
RNF20ENSG00000155827.7455.25840765.73990-0.750203.903503.20930K562HNRNPC
RNF20ENSG00000155827.7396.65840891.36450-1.168104.590103.36470K562HNRNPM
RNF20ENSG00000155827.7758.374401023.23750-0.432202.724201.70820K562IGF2BP2
RNF20ENSG00000155827.7826.391401073.53120-0.377503.334902.31010K562MATR3
RNF20ENSG00000155827.7731.59490911.08630-0.316502.146501.37480K562METAP2
RNF20ENSG00000155827.71407.970801809.91080-0.362302.749701.62490K562MSI2
RNF20ENSG00000155827.7836.955601051.32850-0.329002.702001.36810K562PCBP1
RNF20ENSG00000155827.7831.044001045.05900-0.330602.730402.07010K562PTBP1
RNF20ENSG00000155827.71798.177501227.693500.550506.050005.28490K562PUS1
RNF20ENSG00000155827.7794.351001002.24370-0.335402.375401.60190K562RBM22
RNF20ENSG00000155827.7630.56630898.42690-0.510803.648102.47940K562RPS3
RNF20ENSG00000155827.7836.597601137.78360-0.443605.191704.09990K562SF3A3
RNF20ENSG00000155827.7667.47050815.77510-0.289502.049901.31580K562SF3B4
RNF20ENSG00000155827.7386.20260593.54470-0.620003.293502.14870K562SRFBP1
RNF20ENSG00000155827.7941.902101165.68530-0.307502.894101.94070K562SRPK2
RNF20ENSG00000155827.7674.61490867.34320-0.362502.598201.58400K562SRSF4
RNF20ENSG00000155827.7486.57340686.31680-0.496202.970401.91530K562SUPV3L1
RNF20ENSG00000155827.7885.19060623.845400.504705.185904.05370K562SYNCRIP
RNF20ENSG00000155827.7649.308701036.90400-0.675307.273206.06720K562TARDBP
RNF20ENSG00000155827.7515.90990726.28410-0.493403.279802.16800K562UCHL5
RNF20ENSG00000155827.71046.434101359.46130-0.377603.247302.30360K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNF20 is not available on ENCORE database.





1 RBPs can affect the splicing of RNF20 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNF20ENSG00000155827.7chr9+104307048104307167104303074104303257104309101104309248-0.295000.000000.00003excludedK562AQR
A3SSRNF20ENSG00000155827.7chr9+1043070341043071671043070481043071671043031201043032570.090000.002030.01307longerK562AQR
A5SSRNF20ENSG00000155827.7chr9+1043091011043093231043091011043092481043094181043094960.097000.000000.00012longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNF20 is not avaliable on ENCORE database.