RBBP8

General Information

Gene Name : RBBP8
Gene ID : ENSG00000101773.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBBP8)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBBP8	ENSG00000101773.18	60.22	49.58	54.90	ENCSR000AEF
HepG2	RBBP8	ENSG00000101773.18	19.00	34.12	26.56	ENCSR985KAT
K562	RBBP8	ENSG00000101773.18	30.47	34.42	32.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBBP8 is not avaliable on ENCORE database.

Proteins bound to RNA

RBBP8 RNA is bound by 7 proteins.

CanvasJS.com

eCLIP assay for RBBP8 is not avaliable on ENCORE database.

7 proteins are bound to RBBP8 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr18	20570899	20570998	+	3'-UTR,CDS,intron-Proximal	4.00559	6.14226	K562	ZNF622
chr18	20556607	20556734	+	intron-Distal	3.67030	5.61949	K562	KHSRP
chr18	20567077	20567187	+	intron-Distal	4.59261	5.20135	HepG2	QKI
chr18	20598990	20599121	+	intron-Distal	4.47005	5.20135	HepG2	QKI
chr18	20572810	20572908	+	CDS	4.29743	4.48692	K562	YBX3
chr18	20564864	20564940	+	3'-UTR,CDS	3.52713	4.20387	K562	ZNF622
chr18	20573546	20573604	+	CDS,intron-Proximal	3.76162	4.09885	HepG2	BCLAF1
chr18	20561696	20561749	+	intron-Distal	3.50232	4.09242	HepG2	QKI
chr18	20580941	20581074	+	intron-Distal	3.76797	3.89889	HepG2	HNRNPL
chr18	20581601	20581665	+	CDS	4.65955	3.89826	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 16 entries

eCLIP assay for RBBP8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBBP8 is not available on ENCORE database.
111 RBPs can affect the levels of RBBP8.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RBBP8 is not available on ENCORE database.

111 RBPs can affect the gene expression of RBBP8 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBBP8	ENSG00000101773.12	1141.64200	477.71200	1.25680	33.83850	32.58570	HepG2	SRSF1
RBBP8	ENSG00000101773.12	770.54800	1757.23300	-1.18930	24.39650	22.84580	K562	AQR
RBBP8	ENSG00000101773.12	303.63570	774.98190	-1.35180	23.12090	21.62090	HepG2	PUF60
RBBP8	ENSG00000101773.12	725.43900	1401.71610	-0.95030	22.81560	20.68970	K562	SF3A3
RBBP8	ENSG00000101773.12	522.00130	998.95050	-0.93640	20.22960	18.68310	HepG2	AUH
RBBP8	ENSG00000101773.12	466.63310	884.72200	-0.92290	17.88140	16.26220	HepG2	HNRNPF
RBBP8	ENSG00000101773.12	465.52000	869.20880	-0.90090	17.01620	15.55030	HepG2	SRSF7
RBBP8	ENSG00000101773.12	485.84970	1114.81460	-1.19820	16.57680	15.13270	HepG2	GPKOW
RBBP8	ENSG00000101773.12	531.59390	940.05700	-0.82240	15.84820	14.82780	HepG2	SSB
RBBP8	ENSG00000101773.12	251.04230	538.93900	-1.10220	14.87300	13.87730	HepG2	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 138 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBBP8 is not available on ENCORE database.

13 RBPs can affect the splicing of RBBP8 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RBBP8	ENSG00000101773.12	chr18	+	20537293	20537359			20529580	20529676	20548768	20548881	0.06700	0.00000	0.00065	included	K562	DROSHA
SE	RBBP8	ENSG00000101773.12	chr18	+	20537293	20537359			20529580	20529676	20548768	20548881	-0.06600	0.00000	0.00278	excluded	K562	SBDS
SE	RBBP8	ENSG00000101773.12	chr18	+	20537293	20537359			20529580	20529676	20548768	20548881	0.21300	0.00000	0.00000	included	K562	HNRNPC
A3SS	RBBP8	ENSG00000101773.12	chr18	+	20581533	20581692			20581548	20581692	20577531	20577697	0.12600	0.00001	0.00007	longer	K562	AQR
MXE	RBBP8	ENSG00000101773.12	chr18	+	20596760	20596887	20602091	20602233	20586325	20586395	20606105	20606449	0.10900	0.00001	0.00011	1included	K562	AQR
SE	RBBP8	ENSG00000101773.12	chr18	+	20537293	20537359			20529580	20529676	20548768	20548881	0.05200	0.00002	0.00741	included	K562	LARP4
SE	RBBP8	ENSG00000101773.12	chr18	+	20586325	20586395			20581548	20581692	20596790	20596887	-0.11500	0.00007	0.02222	excluded	K562	MTPAP
SE	RBBP8	ENSG00000101773.12	chr18	+	20537293	20537359			20529580	20529676	20548768	20548881	0.10200	0.00011	0.00299	included	HepG2	U2AF1
SE	RBBP8	ENSG00000101773.12	chr18	+	20586325	20586395			20581548	20581692	20596790	20596887	-0.09800	0.00016	0.03323	excluded	K562	NSUN2
SE	RBBP8	ENSG00000101773.12	chr18	+	20573683	20573810			20572710	20573602	20576336	20576425	-0.09300	0.00017	0.00275	excluded	K562	AQR

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBBP8

General Information

Functions

Localization

Domains (AlphaFold: RBBP8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBBP8 is not avaliable on ENCORE database.

7 proteins are bound to RBBP8 RNA:

eCLIP assay for RBBP8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBBP8 is not available on ENCORE database.

111 RBPs can affect the gene expression of RBBP8 :

The Knockdown/knockout RNA-Seq assay for RBBP8 is not available on ENCORE database.

13 RBPs can affect the splicing of RBBP8 :

The Knockdown/knockout RNA-Seq assay for RBBP8 is not avaliable on ENCORE database.