PRR13

General Information

Gene Name : PRR13
Gene ID : ENSG00000205352.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRR13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRR13	ENSG00000205352.10	170.82	253.28	212.05	ENCSR000AEF
HepG2	PRR13	ENSG00000205352.10	119.04	122.87	120.96	ENCSR985KAT
K562	PRR13	ENSG00000205352.10	380.54	428.68	404.61	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRR13 is not avaliable on ENCORE database.

Proteins bound to RNA

PRR13 RNA is bound by 14 proteins.

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eCLIP assay for PRR13 is not avaliable on ENCORE database.

14 proteins are bound to PRR13 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	53836514	53836570	+	5'-UTR,CDS,intron-Proximal	5.02316	19.12147	K562	AQR
chr12	53835576	53835626	+	5'-UTR,CDS,intron-Proximal	6.52731	18.58475	K562	AQR
chr12	53837414	53837519	+	5'-UTR,CDS,intron-Proximal	3.15008	16.60216	K562	UCHL5
chr12	53840157	53840255	+	3'-UTR,intron-Distal	4.37866	11.39836	K562	UPF1
chr12	53836447	53836513	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.70622	11.02376	K562	AQR
chr12	53837162	53837204	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.32138	9.47387	HepG2	U2AF2
chr12	53836973	53837094	+	intron-Distal,intron-Proximal	4.54541	9.27589	HepG2	PCBP2
chr12	53836444	53836556	+	3'-UTR,5'-UTR,CDS,intron-Proximal	5.38024	8.88638	HepG2	AQR
chr12	53836437	53836563	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.41922	8.61034	K562	BUD13
chr12	53836508	53836565	+	5'-UTR,CDS,intron-Proximal	3.68371	8.45537	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for PRR13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRR13 is not available on ENCORE database.
108 RBPs can affect the levels of PRR13.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRR13 is not available on ENCORE database.

108 RBPs can affect the gene expression of PRR13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRR13	ENSG00000205352.6	4505.31120	7628.72770	-0.75980	28.33400	25.66670	K562	EIF4G2
PRR13	ENSG00000205352.6	2394.46960	1454.81650	0.71880	26.68300	25.42640	HepG2	ZNF622
PRR13	ENSG00000205352.6	2547.58130	5257.96940	-1.04540	24.70200	23.13860	K562	AQR
PRR13	ENSG00000205352.6	5520.69940	3212.36630	0.78110	23.92990	22.11350	K562	RBM15
PRR13	ENSG00000205352.6	2384.16400	4368.69100	-0.87370	21.40340	19.81940	K562	HNRNPC
PRR13	ENSG00000205352.6	4932.00170	3194.90290	0.62630	21.13660	19.68070	K562	AGGF1
PRR13	ENSG00000205352.6	3458.46040	5256.15240	-0.60390	21.62080	19.66710	K562	MTPAP
PRR13	ENSG00000205352.6	713.74770	1381.80850	-0.95310	19.76900	18.65550	HepG2	TIAL1
PRR13	ENSG00000205352.6	2740.67870	1398.97230	0.97010	16.18970	14.46020	HepG2	ASCC1
PRR13	ENSG00000205352.6	2713.33990	1406.21010	0.94820	15.89400	14.43610	HepG2	IGF2BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 129 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRR13 is not available on ENCORE database.

18 RBPs can affect the splicing of PRR13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
A3SS	PRR13	ENSG00000205352.6	chr12	+	53837174	53837557			53837270	53837557	53836478	53836517	-0.29800	0.00071	shorter	HepG2	HNRNPK
A3SS	PRR13	ENSG00000205352.6	chr12	+	53837174	53837557			53837350	53837557	53836478	53836517	0.07900	0.00133	longer	K562	PPIL4
A3SS	PRR13	ENSG00000205352.6	chr12	+	53837174	53837557			53837462	53837557	53836478	53836517	-0.57600	0.00000	shorter	K562	U2AF2
A3SS	PRR13	ENSG00000205352.6	chr12	+	53837174	53837557			53837350	53837557	53836442	53836517	0.08800	0.00000	longer	K562	SBDS
A3SS	PRR13	ENSG00000205352.6	chr12	+	53837174	53837557			53837462	53837557	53836478	53836517	-0.47700	0.00000	shorter	K562	U2AF1
A3SS	PRR13	ENSG00000205352.6	chr12	+	53837174	53837557			53837324	53837557	53836478	53836517	0.05400	0.00080	longer	K562	HNRNPC
MXE	PRR13	ENSG00000205352.6	chr12	+	53836478	53836517	53837324	53837557	53835532	53835576	53839798	53840320	0.14800	0.00007	1included	HepG2	FTO
MXE	PRR13	ENSG00000205352.6	chr12	+	53836478	53836517	53837324	53837557	53835532	53835576	53839798	53840320	0.15200	0.00002	1included	K562	SRSF1
MXE	PRR13	ENSG00000205352.6	chr12	+	53836478	53836517	53837324	53837557	53835532	53835576	53839798	53840320	-0.13500	0.00002	2included	K562	UTP3
MXE	PRR13	ENSG00000205352.6	chr12	+	53836478	53836517	53837174	53837557	53835388	53835576	53839798	53840417	-0.13500	0.00002	2included	K562	UTP3

Showing 1 to 10 of 28 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRR13

General Information

Functions

Localization

Domains (AlphaFold: PRR13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRR13 is not avaliable on ENCORE database.

14 proteins are bound to PRR13 RNA:

eCLIP assay for PRR13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRR13 is not available on ENCORE database.

108 RBPs can affect the gene expression of PRR13 :

The Knockdown/knockout RNA-Seq assay for PRR13 is not available on ENCORE database.

18 RBPs can affect the splicing of PRR13 :

The Knockdown/knockout RNA-Seq assay for PRR13 is not avaliable on ENCORE database.