PPP4C

General Information

Gene Name : PPP4C
Gene ID : ENSG00000149923.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PPP4C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PPP4C	ENSG00000149923.13	21.78	56.95	39.37	ENCSR000AEF
HepG2	PPP4C	ENSG00000149923.13	158.16	94.64	126.40	ENCSR985KAT
K562	PPP4C	ENSG00000149923.13	113.24	92.59	102.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PPP4C is not avaliable on ENCORE database.

Proteins bound to RNA

PPP4C RNA is bound by 27 proteins.

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eCLIP assay for PPP4C is not avaliable on ENCORE database.

27 proteins are bound to PPP4C RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	30087633	30087762	+	5'-UTR,CDS,intron-Proximal	4.41046	400.00000	HepG2	DDX3X
chr16	30087614	30087725	+	5'-UTR,CDS,intron-Proximal	3.88662	34.10774	K562	AQR
chr16	30087341	30087415	+	5'-UTR	3.92106	33.61531	HepG2	DDX3X
chr16	30087601	30087687	+	5'-UTR,intron-Proximal	5.63223	31.80492	HepG2	AQR
chr16	30087635	30087759	+	5'-UTR,CDS,intron-Proximal	4.41317	28.91653	HepG2	RPS3
chr16	30087415	30087483	+	5'-UTR,intron-Proximal	5.55767	27.63431	K562	AQR
chr16	30092591	30092662	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.38912	22.24290	HepG2	PRPF8
chr16	30094863	30094884	+	3'-UTR,CDS	4.14134	21.99970	K562	YBX3
chr16	30094982	30094990	+	3'-UTR,CDS	3.94343	20.25091	K562	YBX3
chr16	30094977	30094982	+	3'-UTR,CDS	3.92566	19.92318	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 84 entries

eCLIP assay for PPP4C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PPP4C is not available on ENCORE database.
83 RBPs can affect the levels of PPP4C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PPP4C is not available on ENCORE database.

83 RBPs can affect the gene expression of PPP4C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PPP4C	ENSG00000149923.9	1194.61140	2531.37220	-1.08340	36.37230	34.63740	HepG2	TAF15
PPP4C	ENSG00000149923.9	108.77500	492.27440	-2.17810	25.56210	22.63440	K562	G3BP2
PPP4C	ENSG00000149923.9	1760.04130	2816.34990	-0.67820	21.01260	19.96590	HepG2	SRSF1
PPP4C	ENSG00000149923.9	1816.20630	2686.19930	-0.56460	14.01070	12.78900	HepG2	RECQL
PPP4C	ENSG00000149923.9	1864.41510	2698.23790	-0.53330	12.52930	11.41230	HepG2	SF3B4
PPP4C	ENSG00000149923.9	2461.95680	1821.20370	0.43480	10.62920	9.73100	HepG2	ZNF622
PPP4C	ENSG00000149923.9	260.66330	492.67640	-0.91850	10.48050	8.91700	K562	U2AF2
PPP4C	ENSG00000149923.9	2229.20210	1603.49220	0.47520	9.66540	8.68680	K562	AGGF1
PPP4C	ENSG00000149923.9	1151.92950	1799.20480	-0.64330	9.47780	8.06830	HepG2	FUBP3
PPP4C	ENSG00000149923.9	3835.69430	2293.00440	0.74210	8.88010	7.92630	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PPP4C is not available on ENCORE database.

40 RBPs can affect the splicing of PPP4C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PPP4C	ENSG00000149923.9	chr16	+	30092579	30092631	30087635	30087796	30093804	30093855	-0.29000	0.00000	excluded	K562	AQR
SE	PPP4C	ENSG00000149923.9	chr16	+	30094975	30095102	30094714	30094888	30095986	30096176	-0.06800	0.00000	excluded	K562	AQR
SE	PPP4C	ENSG00000149923.9	chr16	+	30092579	30092631	30087635	30087796	30093804	30093855	-0.07000	0.00023	excluded	K562	MTPAP
SE	PPP4C	ENSG00000149923.9	chr16	+	30092520	30092631	30087635	30087796	30093804	30093855	-0.12800	0.00007	excluded	HepG2	MATR3
SE	PPP4C	ENSG00000149923.9	chr16	+	30092579	30092631	30087635	30087796	30093804	30093855	-0.07100	0.00005	excluded	HepG2	SF3A3
SE	PPP4C	ENSG00000149923.9	chr16	+	30092579	30092631	30087635	30087796	30093804	30093855	-0.11600	0.00001	excluded	HepG2	SF3B4
A3SS	PPP4C	ENSG00000149923.9	chr16	+	30092520	30092631	30092579	30092631	30087635	30087796	0.05100	0.00000	longer	K562	AQR
A5SS	PPP4C	ENSG00000149923.9	chr16	+	30093720	30093920	30093720	30093855	30094066	30094305	0.07600	0.00000	longer	K562	AQR
A5SS	PPP4C	ENSG00000149923.9	chr16	+	30087337	30087487	30087337	30087415	30087635	30087796	0.22900	0.00000	longer	K562	AQR
A5SS	PPP4C	ENSG00000149923.9	chr16	+	30094066	30094284	30094066	30094168	30094714	30094888	0.48900	0.00000	longer	K562	AQR

Showing 1 to 10 of 89 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PPP4C

General Information

Functions

Localization

Domains (AlphaFold: PPP4C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PPP4C is not avaliable on ENCORE database.

27 proteins are bound to PPP4C RNA:

eCLIP assay for PPP4C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PPP4C is not available on ENCORE database.

83 RBPs can affect the gene expression of PPP4C :

The Knockdown/knockout RNA-Seq assay for PPP4C is not available on ENCORE database.

40 RBPs can affect the splicing of PPP4C :

The Knockdown/knockout RNA-Seq assay for PPP4C is not avaliable on ENCORE database.