POP1

General Information

Gene Name       : POP1
Gene ID             : ENSG00000104356.10
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: POP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POP1ENSG00000104356.1015.0714.6414.86ENCSR000AEF
HepG2POP1ENSG00000104356.107.828.918.37ENCSR985KAT
K562POP1ENSG00000104356.1011.4311.8411.63ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • POP1 RNA is bound by 2 proteins.  







eCLIP assay for POP1 is not avaliable on ENCORE database.





2 proteins are bound to POP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr89913065899130682+intron-Distal4.640088.33693K562PTBP1
chr89913068299130706+intron-Distal5.296766.95895K562PTBP1
chr89913059499130706+intron-Distal4.824177.11021HepG2PTBP1
chr89915866899158772+intron-Distal,intron-Proximal3.977583.26999K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POP1 is not available on ENCORE database.

  • 104 RBPs can affect the levels of POP1.  








The Knockdown/knockout RNA-Seq assay for POP1 is not available on ENCORE database.





104 RBPs can affect the gene expression of POP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POP1ENSG00000104356.6308.01520163.844300.910608.275807.33870HepG2ACO1
POP1ENSG00000104356.6396.27520134.427801.5596013.5098012.42630HepG2AKAP1
POP1ENSG00000104356.6224.83570164.621300.449602.061501.38620HepG2AKAP8L
POP1ENSG00000104356.6134.3383066.890101.005903.264502.42800HepG2CNOT7
POP1ENSG00000104356.695.33930182.45070-0.936402.143101.52850HepG2CPSF6
POP1ENSG00000104356.6376.77690225.868000.738106.036305.15640HepG2CELF1
POP1ENSG00000104356.6155.33870242.87480-0.644804.036903.16900HepG2DAZAP1
POP1ENSG00000104356.6219.54760151.536500.534802.932402.07630HepG2DDX19B
POP1ENSG00000104356.6357.22820199.693500.839003.484202.62910HepG2DDX55
POP1ENSG00000104356.697.10370142.79110-0.556302.159201.56960HepG2DNAJC2
POP1ENSG00000104356.6132.9330082.468400.688702.150401.34460HepG2EIF3D
POP1ENSG00000104356.6188.76860117.498700.683902.689102.05900HepG2EIF4A3
POP1ENSG00000104356.6243.37320114.420501.088705.313204.38150HepG2EIF4B
POP1ENSG00000104356.6252.81450160.112900.658903.000502.13340HepG2EWSR1
POP1ENSG00000104356.6320.24430161.084300.991305.176704.15300HepG2FIP1L1
POP1ENSG00000104356.6227.42910138.095900.719602.965701.81150HepG2FUS
POP1ENSG00000104356.6211.01770118.581400.831402.887702.18050HepG2FXR1
POP1ENSG00000104356.6179.75080109.985800.708602.793402.12540HepG2G3BP1
POP1ENSG00000104356.6118.8404073.429700.694502.230601.43220HepG2GEMIN5
POP1ENSG00000104356.699.65490206.85990-1.053602.292801.70710HepG2GPKOW
POP1ENSG00000104356.677.32280145.45940-0.911703.434002.72320HepG2HNRNPA1
POP1ENSG00000104356.6159.59460313.73410-0.975109.261108.04730HepG2HNRNPF
POP1ENSG00000104356.666.79870197.40680-1.563304.036303.29080HepG2HNRNPLL
POP1ENSG00000104356.6145.3711084.740700.778502.666101.46190HepG2HSPD1
POP1ENSG00000104356.6131.24020308.93640-1.2351011.7516010.35880HepG2IGF2BP1
POP1ENSG00000104356.6262.47220104.935201.322604.864703.57420HepG2IGF2BP3
POP1ENSG00000104356.692.20180164.17330-0.832404.642903.71330HepG2ILF2
POP1ENSG00000104356.6197.52570118.622900.735602.684702.03860HepG2MAGOH
POP1ENSG00000104356.6324.18010119.282001.4423011.151909.94720HepG2MATR3
POP1ENSG00000104356.6232.4092086.315901.428906.584705.01750HepG2METAP2
POP1ENSG00000104356.6191.37260122.087700.648402.376801.78730HepG2NCBP2
POP1ENSG00000104356.670.76600175.01140-1.306303.138502.34220HepG2NSUN2
POP1ENSG00000104356.6223.19920159.094100.488402.244001.47330HepG2PARN
POP1ENSG00000104356.6187.5241095.750800.969605.793404.96620HepG2PCBP1
POP1ENSG00000104356.689.57830143.35230-0.678302.721301.98950HepG2PPIL4
POP1ENSG00000104356.6193.1078097.436100.986806.161805.40850HepG2PTBP1
POP1ENSG00000104356.6128.06870229.89360-0.844004.730103.97600HepG2PUF60
POP1ENSG00000104356.6470.46500244.038500.9469013.1378012.04880HepG2PUM1
POP1ENSG00000104356.6231.48410126.191000.875203.234902.47580HepG2RAVER1
POP1ENSG00000104356.6737.60640327.799801.1699020.6950019.54680HepG2RBM22
POP1ENSG00000104356.6256.54000108.432001.242309.660408.76030HepG2NELFE
POP1ENSG00000104356.6174.88530100.998800.792003.709003.00950HepG2RECQL
POP1ENSG00000104356.6125.21940338.00060-1.4326014.1195012.80030HepG2RPLP0
POP1ENSG00000104356.6158.0583080.238500.978004.380303.62500HepG2RPS19
POP1ENSG00000104356.6238.80740139.414300.776402.415701.41640HepG2RPS5
POP1ENSG00000104356.6232.86800152.347600.612002.215301.50460HepG2RRP9
POP1ENSG00000104356.686.38410143.13330-0.728503.018902.35160HepG2SAFB2
POP1ENSG00000104356.6257.74840146.791000.812104.289803.43980HepG2SF3A3
POP1ENSG00000104356.689.97370195.41560-1.119002.645501.95630HepG2SF3B1
POP1ENSG00000104356.6140.00390220.42460-0.654803.642902.85630HepG2SLBP
POP1ENSG00000104356.6258.48200166.922900.630803.976403.22760HepG2SMN1
POP1ENSG00000104356.6204.63610128.523300.670902.701201.75760HepG2SMNDC1
POP1ENSG00000104356.6478.26380105.878202.1753038.5457037.22950HepG2SRSF1
POP1ENSG00000104356.6301.56360226.982000.409802.075001.52310HepG2SRSF5
POP1ENSG00000104356.6170.76200308.24080-0.852107.495006.43960HepG2SRSF7
POP1ENSG00000104356.6126.2471086.141400.551401.878901.40830HepG2SRSF9
POP1ENSG00000104356.6218.98390321.45200-0.553803.665903.09360HepG2SSB
POP1ENSG00000104356.6345.00230258.144900.418302.463501.86990HepG2SUCLG1
POP1ENSG00000104356.6102.27440192.31010-0.911002.139001.48960HepG2TARDBP
POP1ENSG00000104356.6251.44740125.685201.000307.137106.25120HepG2UTP3
POP1ENSG00000104356.6209.00590124.043600.752602.694101.45380HepG2XRCC5
POP1ENSG00000104356.6243.35550143.174600.765205.305804.61050HepG2ZNF622
POP1ENSG00000104356.6112.16620171.27870-0.610702.518201.97190K562AGGF1
POP1ENSG00000104356.6203.79490809.94330-1.990709.784808.78510K562AQR
POP1ENSG00000104356.6303.80590485.62840-0.676706.868305.32530K562BCLAF1
POP1ENSG00000104356.6126.28760325.34960-1.3653011.711409.88140K562BOP1
POP1ENSG00000104356.6337.49790503.81380-0.578003.578301.91900K562BUD13
POP1ENSG00000104356.696.14830173.06850-0.848002.402401.43450K562CCAR1
POP1ENSG00000104356.6514.55980731.35200-0.507203.345601.73810K562CKAP4
POP1ENSG00000104356.6240.56950345.92620-0.524003.106402.27440K562CPSF6
POP1ENSG00000104356.6234.72100368.42160-0.650404.038002.73010K562CSTF2
POP1ENSG00000104356.6106.86810194.55770-0.864404.793303.36870K562DDX3X
POP1ENSG00000104356.6274.40930411.65760-0.585102.772001.49270K562EEF2
POP1ENSG00000104356.6458.46030800.71900-0.804504.363303.48740K562EIF2S2
POP1ENSG00000104356.6401.21310312.699600.359502.176001.46450K562EIF3G
POP1ENSG00000104356.6232.45410334.01750-0.523003.033701.70650K562EXOSC5
POP1ENSG00000104356.6363.89000519.94200-0.514803.484202.52400K562FIP1L1
POP1ENSG00000104356.6160.42570260.07000-0.697002.352101.32510K562FKBP4
POP1ENSG00000104356.6180.14830351.99840-0.966407.485706.04350K562FMR1
POP1ENSG00000104356.6157.86540298.36200-0.918406.018504.61470K562FTO
POP1ENSG00000104356.6737.35710211.372301.8025042.4549040.24870K562FXR1
POP1ENSG00000104356.6149.95160330.26340-1.139109.483208.00350K562GPKOW
POP1ENSG00000104356.6704.496601067.21290-0.599202.519201.79440K562GRSF1
POP1ENSG00000104356.678.44030300.02360-1.935407.307206.38160K562HNRNPC
POP1ENSG00000104356.6626.70160484.068100.372502.845401.93940K562HNRNPU
POP1ENSG00000104356.6488.99150704.91350-0.527604.066603.10790K562HSPD1
POP1ENSG00000104356.6159.99860286.50880-0.840504.703903.21780K562IGF2BP2
POP1ENSG00000104356.6116.45570282.03260-1.276107.891306.22110K562KRR1
POP1ENSG00000104356.6459.09510301.283700.607603.575002.61260K562MAGOH
POP1ENSG00000104356.6117.99080181.05010-0.617702.299401.34920K562MAK16
POP1ENSG00000104356.6413.87930300.699000.460802.930901.97850K562MATR3
POP1ENSG00000104356.6200.14460322.37860-0.687704.325603.21450K562METAP2
POP1ENSG00000104356.6669.00850985.47070-0.558804.159502.77650K562MSI2
POP1ENSG00000104356.6293.46980441.04040-0.587705.421304.42870K562NSUN2
POP1ENSG00000104356.6114.32850217.47820-0.927702.958301.92450K562PABPN1
POP1ENSG00000104356.6282.79690424.86970-0.587303.407802.48400K562PCBP3
POP1ENSG00000104356.6430.01700590.25480-0.456903.027902.16460K562PPIG
POP1ENSG00000104356.6578.44000387.102400.579404.195403.27200K562PRPF8
POP1ENSG00000104356.6475.52940292.703000.700006.504305.52000K562PTBP1
POP1ENSG00000104356.6755.251201051.28830-0.477105.043303.73080K562PUM2
POP1ENSG00000104356.6116.75470176.78430-0.598502.040801.56110K562PUS1
POP1ENSG00000104356.682.55750267.56690-1.696407.957705.01530K562RBM39
POP1ENSG00000104356.6462.53990295.435200.646604.788803.30520K562NELFE
POP1ENSG00000104356.6454.09190290.356200.645104.812103.38250K562SAFB
POP1ENSG00000104356.6165.63240314.13230-0.923405.691804.26350K562SF3B1
POP1ENSG00000104356.6190.36220322.56420-0.760802.658201.40970K562SSB
POP1ENSG00000104356.6420.01740623.92880-0.570903.955902.41300K562STAU1
POP1ENSG00000104356.6134.59080273.24190-1.021603.693601.94890K562SUPT6H
POP1ENSG00000104356.6247.61020374.92490-0.598503.044201.97570K562SUPV3L1
POP1ENSG00000104356.6662.05460326.872501.0181014.5632012.68440K562SYNCRIP
POP1ENSG00000104356.6454.34020608.21940-0.420803.547502.10160K562TROVE2
POP1ENSG00000104356.6194.59320396.74880-1.027807.053505.34500K562UCHL5
POP1ENSG00000104356.6304.94530467.64590-0.616905.215204.26260K562UPF1
POP1ENSG00000104356.6240.02130400.14760-0.737405.258504.03110K562WDR3
POP1ENSG00000104356.6573.61340416.122200.463003.616802.65800K562WDR43
POP1ENSG00000104356.6140.68870268.83400-0.934203.130101.41560K562YTHDC2
POP1ENSG00000104356.6446.92310912.62530-1.030004.797203.61380K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POP1 is not available on ENCORE database.





1 RBPs can affect the splicing of POP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPOP1ENSG00000104356.6chr8+9915336599153509991529969915311699158795991589110.071000.002470.02609includedK562AQR
SEPOP1ENSG00000104356.6chr8+991610429916123499158795991589119916271299162867-0.160000.003940.03830excludedK562AQR
A3SSPOP1ENSG00000104356.6chr8+9914907099149182991490889914918299148709991489660.195000.000400.00306longerK562AQR
A3SSPOP1ENSG00000104356.6chr8+9915228199152417991523059915241799149088991491820.070000.006570.03674longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for POP1 is not avaliable on ENCORE database.