PDCL

General Information

Gene Name : PDCL
Gene ID : ENSG00000136940.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PDCL)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PDCL	ENSG00000136940.13	7.74	8.87	8.30	ENCSR000AEF
HepG2	PDCL	ENSG00000136940.13	13.14	14.90	14.02	ENCSR985KAT
K562	PDCL	ENSG00000136940.13	8.43	8.57	8.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PDCL is not avaliable on ENCORE database.

Proteins bound to RNA

PDCL RNA is bound by 8 proteins.

CanvasJS.com

eCLIP assay for PDCL is not avaliable on ENCORE database.

8 proteins are bound to PDCL RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	125581819	125581919	-	3'-UTR,intron-Distal	3.15347	5.67011	K562	DDX6
chr9	125579841	125579906	-	intron-Distal	4.76566	5.60103	K562	UPF1
chr9	125579837	125579907	-	intron-Distal	3.51537	5.56056	K562	AKAP1
chr9	125581743	125581896	-	3'-UTR,intron-Distal	3.11715	5.54889	K562	UPF1
chr9	125585295	125585394	-	CDS,intron-Distal	3.99827	5.37538	K562	ZNF622
chr9	125588912	125589040	-	CDS,intron-Distal,intron-Proximal	3.93706	5.08388	K562	UCHL5
chr9	125579399	125579481	-	intron-Distal	5.06086	5.00858	K562	AKAP1
chr9	125588934	125589066	-	CDS,intron-Distal,intron-Proximal	4.40224	4.23295	HepG2	GRWD1
chr9	125581844	125581891	-	3'-UTR,intron-Distal	3.44668	4.09267	K562	FAM120A
chr9	125585293	125585442	-	CDS,intron-Distal,intron-Proximal	3.36687	3.79741	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 12 entries

eCLIP assay for PDCL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PDCL is not available on ENCORE database.
76 RBPs can affect the levels of PDCL.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PDCL is not available on ENCORE database.

76 RBPs can affect the gene expression of PDCL :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PDCL	ENSG00000136940.9	181.10600	411.97200	-1.18570	17.05540	15.56950	HepG2	DNAJC2
PDCL	ENSG00000136940.9	209.71510	405.26840	-0.95040	12.29720	10.79800	HepG2	DDX19B
PDCL	ENSG00000136940.9	1194.26370	662.64920	0.84970	11.44740	10.39100	K562	PUS1
PDCL	ENSG00000136940.9	359.61460	702.42720	-0.96590	11.26420	9.71220	K562	GRSF1
PDCL	ENSG00000136940.9	183.75620	398.44210	-1.11660	10.34320	9.28180	HepG2	BOP1
PDCL	ENSG00000136940.9	249.75530	438.11740	-0.81080	9.43500	8.35080	HepG2	CKAP4
PDCL	ENSG00000136940.9	282.92160	541.78770	-0.93730	9.15580	7.77110	K562	MTPAP
PDCL	ENSG00000136940.9	387.66270	610.10140	-0.65420	7.76220	6.98810	HepG2	SSB
PDCL	ENSG00000136940.9	293.69820	473.63270	-0.68940	7.99360	6.81540	HepG2	ILF2
PDCL	ENSG00000136940.9	283.00460	463.67820	-0.71230	7.56170	6.59830	HepG2	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PDCL is not available on ENCORE database.

4 RBPs can affect the splicing of PDCL :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	PDCL	ENSG00000136940.9	chr9	-	125585294	125585540			125585294	125585476	125588894	125589071	0.09600	0.00000	0.00000	longer	K562	AQR
MXE	PDCL	ENSG00000136940.9	chr9	-	125585294	125585476	125588894	125589071	125580622	125582915	125590749	125590910	-0.21300	0.00007	0.00501	2included	K562	DDX55
MXE	PDCL	ENSG00000136940.9	chr9	-	125585294	125585476	125588894	125589071	125580622	125582915	125590749	125590910	0.15100	0.00053	0.00475	1included	HepG2	U2AF2
MXE	PDCL	ENSG00000136940.9	chr9	-	125585294	125585361	125588894	125589071	125580622	125582915	125590749	125590910	0.14900	0.00098	0.00802	1included	HepG2	U2AF2
MXE	PDCL	ENSG00000136940.9	chr9	-	125585294	125585476	125588894	125589071	125580622	125582915	125590749	125590910	0.12600	0.00353	0.03740	1included	HepG2	SFPQ
MXE	PDCL	ENSG00000136940.9	chr9	-	125585294	125585361	125588894	125589071	125580622	125582915	125590749	125590910	0.12000	0.00762	0.06551	1included	HepG2	SFPQ

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PDCL

General Information

Functions

Localization

Domains (AlphaFold: PDCL)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PDCL is not avaliable on ENCORE database.

8 proteins are bound to PDCL RNA:

eCLIP assay for PDCL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PDCL is not available on ENCORE database.

76 RBPs can affect the gene expression of PDCL :

The Knockdown/knockout RNA-Seq assay for PDCL is not available on ENCORE database.

4 RBPs can affect the splicing of PDCL :

The Knockdown/knockout RNA-Seq assay for PDCL is not avaliable on ENCORE database.