NUBP2

General Information

Gene Name : NUBP2
Gene ID : ENSG00000095906.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NUBP2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NUBP2	ENSG00000095906.16	0.46	4.42	2.44	ENCSR000AEF
HepG2	NUBP2	ENSG00000095906.16	43.00	4.30	23.65	ENCSR985KAT
K562	NUBP2	ENSG00000095906.16	30.80	7.64	19.22	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NUBP2 is not avaliable on ENCORE database.

Proteins bound to RNA

NUBP2 RNA is bound by 21 proteins.

CanvasJS.com

eCLIP assay for NUBP2 is not avaliable on ENCORE database.

21 proteins are bound to NUBP2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	1839062	1839154	+	3'-UTR	4.79754	15.98596	K562	PABPC4
chr16	1838972	1839062	+	3'-UTR	4.64862	12.35914	K562	PABPC4
chr16	1836349	1836418	+	intron-Distal	5.15400	9.80174	K562	NONO
chr16	1838969	1839069	+	3'-UTR	5.13194	8.99356	HepG2	UPF1
chr16	1833302	1833398	+	5'-UTR,intron-Distal	3.61374	8.12417	K562	NONO
chr16	1839055	1839135	+	3'-UTR	3.79909	7.87505	K562	UPF1
chr16	1836771	1836832	+	3'-UTR,CDS,intron-Distal	3.88505	7.68265	K562	XRCC6
chr16	1837600	1837672	+	intron-Proximal	3.63795	7.67169	K562	SF3B4
chr16	1836340	1836432	+	intron-Distal	3.88747	7.48556	K562	EWSR1
chr16	1836450	1836541	+	3'-UTR,CDS,intron-Proximal	4.93562	7.30082	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 51 entries

eCLIP assay for NUBP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NUBP2 is not available on ENCORE database.
107 RBPs can affect the levels of NUBP2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NUBP2 is not available on ENCORE database.

107 RBPs can affect the gene expression of NUBP2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NUBP2	ENSG00000095906.12	543.65730	188.60050	1.52730	29.04270	27.38540	HepG2	SUCLG1
NUBP2	ENSG00000095906.12	551.98340	167.96170	1.71640	27.26310	25.65460	HepG2	PUF60
NUBP2	ENSG00000095906.12	317.23540	78.44920	2.01560	27.79050	25.64130	HepG2	PPIL4
NUBP2	ENSG00000095906.12	1611.04570	737.82990	1.12650	26.60390	24.95580	K562	AGGF1
NUBP2	ENSG00000095906.12	286.26590	78.16780	1.87260	25.47130	23.68270	HepG2	DNAJC2
NUBP2	ENSG00000095906.12	108.68350	381.43560	-1.81130	24.93100	23.47530	HepG2	TAF15
NUBP2	ENSG00000095906.12	448.03400	161.03260	1.47620	24.15910	22.48760	HepG2	SLBP
NUBP2	ENSG00000095906.12	253.15750	63.03660	2.00570	22.25830	19.61480	K562	SF3B4
NUBP2	ENSG00000095906.12	304.02280	78.32480	1.95650	19.10100	17.62730	HepG2	SAFB2
NUBP2	ENSG00000095906.12	554.90520	178.29070	1.63790	16.90040	15.69100	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NUBP2 is not available on ENCORE database.

27 RBPs can affect the splicing of NUBP2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NUBP2	ENSG00000095906.12	chr16	+	1836537	1836956	1832996	1833037	1837677	1837832	-0.42100	0.00000	0.00010	excluded	K562	SRSF1
RI	NUBP2	ENSG00000095906.12	chr16	+	1836537	1837832	1836537	1836956	1837677	1837832	0.35700	0.00000	0.00001	included	K562	EFTUD2
SE	NUBP2	ENSG00000095906.12	chr16	+	1836757	1836956	1836537	1836656	1837677	1837778	-0.36700	0.00001	0.00968	excluded	HepG2	SMNDC1
A5SS	NUBP2	ENSG00000095906.12	chr16	+	1836537	1836956	1836537	1836656	1837677	1837832	-0.34400	0.00005	0.03490	shorter	HepG2	DDX55
SE	NUBP2	ENSG00000095906.12	chr16	+	1836738	1836956	1836537	1836656	1837677	1837741	-0.34800	0.00006	0.01963	excluded	HepG2	DDX55
A3SS	NUBP2	ENSG00000095906.12	chr16	+	1836537	1837832	1837677	1837832	1832932	1833037	-0.21100	0.00008	0.00550	shorter	K562	PUS1
RI	NUBP2	ENSG00000095906.12	chr16	+	1836537	1837832	1836537	1836956	1837677	1837832	0.21100	0.00008	0.00076	included	K562	PUS1
SE	NUBP2	ENSG00000095906.12	chr16	+	1836757	1836956	1836537	1836656	1837677	1837832	-0.29400	0.00009	0.01593	excluded	HepG2	LARP4
A5SS	NUBP2	ENSG00000095906.12	chr16	+	1836537	1836956	1836537	1836656	1837677	1837832	-0.39100	0.00009	0.04610	shorter	HepG2	LARP4
RI	NUBP2	ENSG00000095906.12	chr16	+	1837941	1838208	1837941	1838052	1838138	1838208	0.10200	0.00012	0.00098	included	K562	AQR

Showing 1 to 10 of 42 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NUBP2

General Information

Functions

Localization

Domains (AlphaFold: NUBP2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NUBP2 is not avaliable on ENCORE database.

21 proteins are bound to NUBP2 RNA:

eCLIP assay for NUBP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NUBP2 is not available on ENCORE database.

107 RBPs can affect the gene expression of NUBP2 :

The Knockdown/knockout RNA-Seq assay for NUBP2 is not available on ENCORE database.

27 RBPs can affect the splicing of NUBP2 :

The Knockdown/knockout RNA-Seq assay for NUBP2 is not avaliable on ENCORE database.