NPTN

General Information

Gene Name : NPTN
Gene ID : ENSG00000156642.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NPTN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NPTN	ENSG00000156642.16	53.56	53.82	53.69	ENCSR000AEF
HepG2	NPTN	ENSG00000156642.16	106.62	100.63	103.62	ENCSR985KAT
K562	NPTN	ENSG00000156642.16	34.45	32.65	33.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NPTN is not avaliable on ENCORE database.

Proteins bound to RNA

NPTN RNA is bound by 32 proteins.

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eCLIP assay for NPTN is not avaliable on ENCORE database.

32 proteins are bound to NPTN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	73925516	73925575	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.16236	39.10627	HepG2	DDX3X
chr15	73925465	73925516	-	CDS,intron-Distal	3.99998	38.27409	HepG2	DDX3X
chr15	73852381	73852433	-	3'-UTR,intron-Distal	4.43103	27.62182	HepG2	FUBP3
chr15	73852441	73852522	-	3'-UTR,intron-Distal	4.27515	25.59614	HepG2	FUBP3
chr15	73862569	73862649	-	CDS,intron-Distal,intron-Proximal	5.15461	21.02086	HepG2	SND1
chr15	73884253	73884342	-	CDS,intron-Distal,intron-Proximal	5.57439	16.83003	HepG2	PRPF8
chr15	73925465	73925569	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.93155	15.08054	HepG2	RPS3
chr15	73852643	73852709	-	3'-UTR,intron-Distal	4.23256	12.54390	HepG2	FUBP3
chr15	73852612	73852678	-	3'-UTR,intron-Distal	4.12911	12.43595	K562	PUM2
chr15	73862649	73862701	-	CDS,intron-Distal,intron-Proximal	5.19775	12.20513	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 73 entries

eCLIP assay for NPTN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NPTN is not available on ENCORE database.
120 RBPs can affect the levels of NPTN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NPTN is not available on ENCORE database.

120 RBPs can affect the gene expression of NPTN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NPTN	ENSG00000156642.12	5197.12770	2126.31370	1.28930	111.96920	109.87800	HepG2	ZNF622
NPTN	ENSG00000156642.12	4888.71140	2483.93750	0.97670	45.55890	43.37660	HepG2	AUH
NPTN	ENSG00000156642.12	4204.18150	2123.61260	0.98520	39.52040	37.66680	HepG2	CELF1
NPTN	ENSG00000156642.12	637.66840	1527.59850	-1.26040	38.63320	36.13780	HepG2	PPIL4
NPTN	ENSG00000156642.12	3600.94530	1633.14000	1.14060	37.38590	35.25850	HepG2	CALR
NPTN	ENSG00000156642.12	4842.09410	2292.80190	1.07840	36.95510	34.73740	HepG2	PUM2
NPTN	ENSG00000156642.12	7581.49510	2664.61520	1.50850	34.49700	32.89400	HepG2	AKAP1
NPTN	ENSG00000156642.12	6616.82020	2552.48140	1.37410	33.66890	31.74990	HepG2	DDX3X
NPTN	ENSG00000156642.12	1332.11770	2474.27450	-0.89330	31.78170	30.56120	HepG2	SRSF1
NPTN	ENSG00000156642.12	3775.19580	2283.51920	0.72520	31.46680	29.48790	HepG2	DAZAP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 142 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NPTN is not available on ENCORE database.

5 RBPs can affect the splicing of NPTN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NPTN	ENSG00000156642.12	chr15	-	73889362	73889710	73884348	73884478	73925465	73925744	0.12600	0.00000	0.00001	included	K562	AQR
A3SS	NPTN	ENSG00000156642.12	chr15	-	73853274	73853523	73853274	73853389	73854236	73854311	0.08700	0.00000	0.00000	longer	K562	AQR
SE	NPTN	ENSG00000156642.12	chr15	-	73889362	73889710	73884348	73884478	73925465	73925744	0.29600	0.00004	0.00136	included	K562	U2AF2
SE	NPTN	ENSG00000156642.12	chr15	-	73879864	73879959	73866002	73866136	73925465	73925584	-0.06000	0.00010	0.00466	excluded	HepG2	SF3A3
SE	NPTN	ENSG00000156642.12	chr15	-	73889362	73889710	73884348	73884478	73925465	73925744	-0.25100	0.00032	0.06149	excluded	K562	FXR2
SE	NPTN	ENSG00000156642.12	chr15	-	73854236	73854311	73853274	73853389	73855576	73855833	-0.08100	0.00049	0.01106	excluded	K562	U2AF2
SE	NPTN	ENSG00000156642.12	chr15	-	73879864	73879959	73866002	73866136	73884306	73884478	-0.05900	0.00134	0.01563	excluded	K562	AQR
SE	NPTN	ENSG00000156642.12	chr15	-	73879864	73879959	73866002	73866136	73884306	73884478	-0.11300	0.00138	0.02622	excluded	K562	U2AF2
SE	NPTN	ENSG00000156642.12	chr15	-	73884306	73884478	73866002	73866136	73925465	73926475	-0.09800	0.00149	0.01978	excluded	HepG2	U2AF2
SE	NPTN	ENSG00000156642.12	chr15	-	73884306	73884478	73866002	73866136	73925465	73926475	-0.13100	0.00160	0.04846	excluded	K562	UTP18

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NPTN

General Information

Functions

Localization

Domains (AlphaFold: NPTN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NPTN is not avaliable on ENCORE database.

32 proteins are bound to NPTN RNA:

eCLIP assay for NPTN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NPTN is not available on ENCORE database.

120 RBPs can affect the gene expression of NPTN :

The Knockdown/knockout RNA-Seq assay for NPTN is not available on ENCORE database.

5 RBPs can affect the splicing of NPTN :

The Knockdown/knockout RNA-Seq assay for NPTN is not avaliable on ENCORE database.