MKRN1

General Information

Gene Name : MKRN1
Gene ID : ENSG00000133606.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MKRN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MKRN1	ENSG00000133606.10	53.72	40.50	47.11	ENCSR000AEF
HepG2	MKRN1	ENSG00000133606.10	41.44	36.21	38.83	ENCSR985KAT
K562	MKRN1	ENSG00000133606.10	58.38	60.75	59.56	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MKRN1 is not avaliable on ENCORE database.

Proteins bound to RNA

MKRN1 RNA is bound by 21 proteins.

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eCLIP assay for MKRN1 is not avaliable on ENCORE database.

21 proteins are bound to MKRN1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	140159645	140159665	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20940	14.22757	K562	YBX3
chr7	140171581	140171659	-	intron-Distal,intron-Proximal	4.20239	12.56991	K562	TIA1
chr7	140171774	140171860	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.37262	12.09266	K562	SF3B4
chr7	140154900	140155011	-	3'-UTR,CDS,intron-Distal	3.55732	11.41791	K562	UCHL5
chr7	140158641	140158765	-	intron-Distal,intron-Proximal	5.51595	11.11361	K562	PRPF8
chr7	140178837	140178906	-	5'-UTR,intron-Distal,intron-Proximal	3.39689	8.32814	K562	AKAP8L
chr7	140158730	140158822	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.30738	8.17562	K562	AQR
chr7	140154786	140154888	-	intron-Distal,intron-Proximal	3.43196	7.70481	K562	AQR
chr7	140156658	140156729	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.32045	7.08280	K562	SF3B4
chr7	140155538	140155590	-	intron-Distal,intron-Proximal	5.32359	6.83960	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for MKRN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MKRN1 is not available on ENCORE database.
100 RBPs can affect the levels of MKRN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MKRN1 is not available on ENCORE database.

100 RBPs can affect the gene expression of MKRN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MKRN1	ENSG00000133606.6	570.39770	1141.64630	-1.00110	25.27580	23.78410	HepG2	TRIM56
MKRN1	ENSG00000133606.6	10316.49870	3763.52280	1.45470	24.66160	23.04650	K562	PUS1
MKRN1	ENSG00000133606.6	1944.41860	3124.59390	-0.68430	21.71770	19.94250	K562	UPF1
MKRN1	ENSG00000133606.6	6716.15010	3667.62840	0.87270	17.68650	16.16480	K562	RBM15
MKRN1	ENSG00000133606.6	4493.42830	2907.89120	0.62770	17.53380	15.63060	K562	SF3A3
MKRN1	ENSG00000133606.6	435.48350	1101.21210	-1.33840	17.13910	13.95110	HepG2	ZRANB2
MKRN1	ENSG00000133606.6	5130.16480	3201.85400	0.68000	14.48050	12.85870	K562	SRSF1
MKRN1	ENSG00000133606.6	5879.80010	3647.69950	0.68870	10.17690	9.17850	K562	AGGF1
MKRN1	ENSG00000133606.6	666.21950	1064.57720	-0.67620	10.44800	8.43380	HepG2	DDX1
MKRN1	ENSG00000133606.6	6240.16090	3795.70510	0.71710	9.50830	8.21060	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MKRN1 is not available on ENCORE database.

8 RBPs can affect the splicing of MKRN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	MKRN1	ENSG00000133606.6	chr7	-	140155589	140155700	140154894	140155033	140156451	140156666	-0.05400	0.00000	0.00033	excluded	K562	TARDBP
A3SS	MKRN1	ENSG00000133606.6	chr7	-	140155018	140155105	140155018	140155033	140155589	140155700	0.11200	0.00000	0.00000	longer	K562	AQR
A3SS	MKRN1	ENSG00000133606.6	chr7	-	140154464	140154681	140154464	140154529	140154894	140155105	0.08200	0.00000	0.00000	longer	K562	AQR
A3SS	MKRN1	ENSG00000133606.6	chr7	-	140155589	140155799	140155589	140155700	140156451	140156666	0.06900	0.00000	0.00000	longer	K562	AQR
A3SS	MKRN1	ENSG00000133606.6	chr7	-	140154894	140155700	140154894	140155033	140156451	140156666	-0.07100	0.00000	0.00011	shorter	K562	PUS1
A3SS	MKRN1	ENSG00000133606.6	chr7	-	140154894	140155700	140154894	140155033	140156451	140156666	-0.11300	0.00000	0.00223	shorter	K562	TARDBP
RI	MKRN1	ENSG00000133606.6	chr7	-	140154894	140155700	140154894	140155033	140155589	140155700	0.09300	0.00000	0.00020	included	K562	PHF6
RI	MKRN1	ENSG00000133606.6	chr7	-	140154894	140155700	140154894	140155033	140155589	140155700	-0.05200	0.00017	0.01155	excluded	K562	SUPV3L1
RI	MKRN1	ENSG00000133606.6	chr7	-	140154894	140155700	140154894	140155033	140155589	140155700	0.06900	0.00017	0.00133	included	K562	AQR
RI	MKRN1	ENSG00000133606.6	chr7	-	140154894	140155700	140154894	140155056	140155589	140155700	-0.25700	0.00032	0.00238	excluded	K562	AQR

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MKRN1

General Information

Functions

Localization

Domains (AlphaFold: MKRN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MKRN1 is not avaliable on ENCORE database.

21 proteins are bound to MKRN1 RNA:

eCLIP assay for MKRN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MKRN1 is not available on ENCORE database.

100 RBPs can affect the gene expression of MKRN1 :

The Knockdown/knockout RNA-Seq assay for MKRN1 is not available on ENCORE database.

8 RBPs can affect the splicing of MKRN1 :

The Knockdown/knockout RNA-Seq assay for MKRN1 is not avaliable on ENCORE database.