LMBR1

General Information

Gene Name : LMBR1
Gene ID : ENSG00000105983.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LMBR1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LMBR1	ENSG00000105983.20	21.07	19.31	20.19	ENCSR000AEF
HepG2	LMBR1	ENSG00000105983.20	16.74	25.57	21.16	ENCSR985KAT
K562	LMBR1	ENSG00000105983.20	35.96	33.53	34.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LMBR1 is not avaliable on ENCORE database.

Proteins bound to RNA

LMBR1 RNA is bound by 43 proteins.

CanvasJS.com

eCLIP assay for LMBR1 is not avaliable on ENCORE database.

43 proteins are bound to LMBR1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	156555477	156555538	-	intron-Distal	5.24809	63.19449	K562	AGGF1
chr7	156555454	156555477	-	intron-Distal	5.27668	52.79423	K562	AGGF1
chr7	156555486	156555536	-	intron-Distal	6.07301	48.55319	K562	HNRNPL
chr7	156555429	156555472	-	intron-Distal	5.89117	44.35560	K562	HNRNPL
chr7	156555472	156555486	-	intron-Distal	5.93163	44.35560	K562	HNRNPL
chr7	156555483	156555539	-	intron-Distal	4.77205	34.71066	HepG2	HNRNPL
chr7	156555427	156555483	-	intron-Distal	4.98343	33.48511	HepG2	HNRNPL
chr7	156555421	156555454	-	intron-Distal	5.54679	32.39459	K562	AGGF1
chr7	156578820	156578985	-	intron-Distal	5.96153	25.23764	HepG2	PCBP2
chr7	156685654	156685747	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.16733	23.13870	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 309 entries

eCLIP assay for LMBR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LMBR1 is not available on ENCORE database.
95 RBPs can affect the levels of LMBR1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LMBR1 is not available on ENCORE database.

95 RBPs can affect the gene expression of LMBR1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LMBR1	ENSG00000105983.15	1089.55310	2024.48190	-0.89380	22.99240	20.58880	K562	HNRNPU
LMBR1	ENSG00000105983.15	1302.73700	2573.51580	-0.98220	19.23080	17.85140	K562	AQR
LMBR1	ENSG00000105983.15	670.96770	1179.36970	-0.81370	18.15780	16.70690	HepG2	HNRNPU
LMBR1	ENSG00000105983.15	751.15770	1250.17500	-0.73490	18.18800	16.60190	HepG2	HNRNPL
LMBR1	ENSG00000105983.15	1201.23970	2151.16400	-0.84060	14.33660	12.24330	K562	FIP1L1
LMBR1	ENSG00000105983.15	910.27580	1372.37190	-0.59230	13.38770	11.96320	HepG2	DAZAP1
LMBR1	ENSG00000105983.15	667.49230	1047.79600	-0.65050	13.05000	11.74190	HepG2	DNAJC2
LMBR1	ENSG00000105983.15	546.87080	1085.05890	-0.98850	13.01010	11.61260	HepG2	U2AF1
LMBR1	ENSG00000105983.15	672.77180	1146.11750	-0.76860	12.46510	11.53600	HepG2	TIAL1
LMBR1	ENSG00000105983.15	1056.07350	1829.25220	-0.79250	11.44570	9.84960	K562	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 113 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LMBR1 is not available on ENCORE database.

21 RBPs can affect the splicing of LMBR1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	LMBR1	ENSG00000105983.15	chr7	-	156480723	156480885	156475684	156476857	156516805	156516872	-0.14100	0.00000	0.00040	excluded	K562	AKAP8L
SE	LMBR1	ENSG00000105983.15	chr7	-	156480723	156480885	156475684	156476857	156516805	156516872	-0.23600	0.00000	0.00039	excluded	HepG2	AKAP1
SE	LMBR1	ENSG00000105983.15	chr7	-	156480723	156480885	156475684	156476857	156516805	156516872	-0.19500	0.00000	0.00000	excluded	K562	HNRNPL
SE	LMBR1	ENSG00000105983.15	chr7	-	156480723	156480885	156475684	156476857	156516805	156516872	-0.37100	0.00000	0.00000	excluded	K562	HNRNPU
SE	LMBR1	ENSG00000105983.15	chr7	-	156480723	156480885	156475684	156476857	156516805	156516872	-0.18100	0.00000	0.00000	excluded	K562	RBM15
SE	LMBR1	ENSG00000105983.15	chr7	-	156480723	156480885	156475684	156476857	156516805	156516872	-0.39500	0.00000	0.00000	excluded	HepG2	HNRNPU
SE	LMBR1	ENSG00000105983.15	chr7	-	156627171	156627269	156626446	156626486	156629506	156629579	0.35300	0.00002	0.00121	included	K562	RBM15
SE	LMBR1	ENSG00000105983.15	chr7	-	156627171	156627269	156626446	156626486	156629506	156629579	0.30700	0.00003	0.00089	included	K562	PUS1
SE	LMBR1	ENSG00000105983.15	chr7	-	156627171	156627289	156626446	156626486	156629506	156629579	0.24000	0.00003	0.00825	included	K562	ZC3H8
SE	LMBR1	ENSG00000105983.15	chr7	-	156627171	156627289	156626446	156626486	156629506	156629579	0.57300	0.00005	0.00145	included	K562	HNRNPC

Showing 1 to 10 of 37 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LMBR1

General Information

Functions

Localization

Domains (AlphaFold: LMBR1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LMBR1 is not avaliable on ENCORE database.

43 proteins are bound to LMBR1 RNA:

eCLIP assay for LMBR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LMBR1 is not available on ENCORE database.

95 RBPs can affect the gene expression of LMBR1 :

The Knockdown/knockout RNA-Seq assay for LMBR1 is not available on ENCORE database.

21 RBPs can affect the splicing of LMBR1 :

The Knockdown/knockout RNA-Seq assay for LMBR1 is not avaliable on ENCORE database.