KDM5B

General Information

Gene Name : KDM5B
Gene ID : ENSG00000117139.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KDM5B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KDM5B	ENSG00000117139.17	6.40	4.48	5.44	ENCSR000AEF
HepG2	KDM5B	ENSG00000117139.17	13.29	18.35	15.82	ENCSR985KAT
K562	KDM5B	ENSG00000117139.17	32.07	39.38	35.73	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KDM5B is not avaliable on ENCORE database.

Proteins bound to RNA

KDM5B RNA is bound by 48 proteins.

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eCLIP assay for KDM5B is not avaliable on ENCORE database.

48 proteins are bound to KDM5B RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	202697343	202697459	-	3'-UTR,intron-Distal	4.96800	74.40398	K562	PUM2
chr1	202758601	202758697	-	intron-Distal	6.38043	47.06362	K562	ILF3
chr1	202697459	202697516	-	3'-UTR,intron-Distal	5.52202	29.03563	K562	PUM2
chr1	202776693	202776775	-	intron-Distal	4.62667	23.67525	K562	CSTF2T
chr1	202777115	202777202	-	intron-Distal	6.26172	21.00150	HepG2	CSTF2T
chr1	202776700	202776784	-	intron-Distal	5.94358	18.22739	HepG2	CSTF2T
chr1	202776934	202777063	-	intron-Distal	3.98287	17.59147	K562	FASTKD2
chr1	202776842	202776957	-	intron-Distal	5.18323	17.56661	HepG2	CSTF2T
chr1	202758637	202758734	-	intron-Distal	5.16826	17.36731	HepG2	PTBP1
chr1	202742282	202742362	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.14987	17.19016	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 203 entries

eCLIP assay for KDM5B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KDM5B is not available on ENCORE database.
110 RBPs can affect the levels of KDM5B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for KDM5B is not available on ENCORE database.

110 RBPs can affect the gene expression of KDM5B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KDM5B	ENSG00000117139.12	7044.07920	3571.91620	0.97960	61.73050	60.16140	HepG2	SRFBP1
KDM5B	ENSG00000117139.12	1413.25820	2708.59240	-0.93850	25.13270	23.91110	HepG2	TIAL1
KDM5B	ENSG00000117139.12	5271.98890	3162.50300	0.73720	23.44930	22.23780	HepG2	RBM22
KDM5B	ENSG00000117139.12	1445.52550	3311.42640	-1.19590	23.84540	22.03860	HepG2	MAGOH
KDM5B	ENSG00000117139.12	3615.00440	1785.78450	1.01730	23.14900	21.68470	HepG2	BOP1
KDM5B	ENSG00000117139.12	9420.54700	5234.27230	0.84770	18.02070	16.67030	K562	PUS1
KDM5B	ENSG00000117139.12	3691.49930	6529.42030	-0.82270	19.03390	15.99150	K562	APOBEC3C
KDM5B	ENSG00000117139.12	1929.81030	3397.19300	-0.81590	16.72240	15.42760	HepG2	PUF60
KDM5B	ENSG00000117139.12	2549.90770	3606.33910	-0.50010	16.54710	15.34690	HepG2	PUM1
KDM5B	ENSG00000117139.12	1870.26810	2787.35590	-0.57570	15.29260	13.96160	HepG2	HNRNPU
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KDM5B is not available on ENCORE database.

25 RBPs can affect the splicing of KDM5B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	KDM5B	ENSG00000117139.12	chr1	-	202735524	202735632	202733176	202733273	202736053	202736188	0.10900	0.00007	included	K562	SRSF1
SE	KDM5B	ENSG00000117139.12	chr1	-	202736053	202736188	202733176	202733273	202742245	202742416	-0.19600	0.00000	excluded	K562	AKAP8L
SE	KDM5B	ENSG00000117139.12	chr1	-	202735524	202735632	202733176	202733273	202736053	202736188	0.12100	0.00003	included	K562	FXR1
SE	KDM5B	ENSG00000117139.12	chr1	-	202736053	202736188	202733176	202733273	202742245	202742416	-0.25800	0.00000	excluded	K562	PUS1
SE	KDM5B	ENSG00000117139.12	chr1	-	202735524	202735632	202733176	202733273	202736053	202736188	0.14400	0.00005	included	HepG2	IGF2BP3
SE	KDM5B	ENSG00000117139.12	chr1	-	202736053	202736188	202733176	202733273	202742245	202742416	-0.19900	0.00000	excluded	K562	UTP18
SE	KDM5B	ENSG00000117139.12	chr1	-	202735524	202735632	202733176	202733273	202736053	202736188	-0.08800	0.00018	excluded	K562	HNRNPU
SE	KDM5B	ENSG00000117139.12	chr1	-	202736053	202736188	202733176	202733273	202742245	202742416	-0.23300	0.00000	excluded	K562	RBM15
SE	KDM5B	ENSG00000117139.12	chr1	-	202736053	202736188	202733176	202733273	202742245	202742416	-0.24600	0.00000	excluded	K562	AGGF1
SE	KDM5B	ENSG00000117139.12	chr1	-	202735524	202735632	202733176	202733273	202736053	202736188	0.57200	0.00000	included	HepG2	HNRNPC

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KDM5B

General Information

Functions

Localization

Domains (AlphaFold: KDM5B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KDM5B is not avaliable on ENCORE database.

48 proteins are bound to KDM5B RNA:

eCLIP assay for KDM5B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KDM5B is not available on ENCORE database.

110 RBPs can affect the gene expression of KDM5B :

The Knockdown/knockout RNA-Seq assay for KDM5B is not available on ENCORE database.

25 RBPs can affect the splicing of KDM5B :

The Knockdown/knockout RNA-Seq assay for KDM5B is not avaliable on ENCORE database.