GYPB

General Information

Gene Name       : GYPB
Gene ID             : ENSG00000250361.8
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GYPB)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GYPBENSG00000250361.80.000.000.00ENCSR000AEF
HepG2GYPBENSG00000250361.80.000.000.00ENCSR985KAT
K562GYPBENSG00000250361.868.5870.9569.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GYPB is not avaliable on ENCORE database.



Proteins bound to RNA
  • GYPB RNA is bound by 14 proteins.  







eCLIP assay for GYPB is not avaliable on ENCORE database.





14 proteins are bound to GYPB RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4144917290144917383-3'-UTR,intron-Distal,intron-Proximal4.8316329.96162K562PCBP1
chr4144920564144920604-3'-UTR,CDS,intron-Distal,intron-Proximal4.113713.02572K562SND1
chr4144918689144918781-3'-UTR,CDS,intron-Distal,intron-Proximal3.028756.61413K562SND1
chr4144917291144917377-3'-UTR,intron-Distal,intron-Proximal3.794495.17497K562APOBEC3C
chr4144939113144939166-intron-Distal3.399274.88138K562KHDRBS1
chr4145032331145032454-3'-UTR,intron-Distal,intron-Proximal4.9490812.27606K562IGF2BP1
chr4145039829145039959-3'-UTR,CDS,intron-Distal,intron-Proximal3.836306.39986K562SF3B4
chr4145031908145032015-3'-UTR,intron-Distal,intron-Proximal3.658216.71517K562IGF2BP1
chr4144918801144918921-intron-Distal,intron-Proximal3.106594.40576K562KHSRP
chr4145041642145041680-3'-UTR,CDS,intron-Distal,intron-Proximal3.478636.19411K562SND1
chr4145038004145038031-3'-UTR,CDS,intron-Distal,intron-Proximal4.2939613.17173K562SND1
chr4145031918145031950-3'-UTR,intron-Distal4.3758215.60617K562HNRNPL
chr4145032504145032566-3'-UTR,CDS,intron-Distal,intron-Proximal3.533746.82656K562SND1
chr4145032087145032133-3'-UTR,intron-Distal,intron-Proximal4.519445.80303K562IGF2BP1
chr4145031883145031918-3'-UTR,intron-Distal4.0588212.06403K562HNRNPL
chr4144922668144922828-intron-Distal3.932816.43604K562HNRNPL
chr4145054731145054868-intron-Distal3.211667.30615K562KHSRP
chr4145039877145039906-3'-UTR,CDS,intron-Distal,intron-Proximal4.7135514.10373K562SND1
chr4145038081145038093-3'-UTR,CDS,intron-Distal,intron-Proximal4.837338.55362K562SND1
chr4145032254145032330-3'-UTR,intron-Distal3.829965.31375K562TARDBP
chr4145057093145057174-intron-Distal4.121154.50052K562HNRNPL
chr4145032035145032087-3'-UTR,intron-Distal,intron-Proximal5.022658.95185K562IGF2BP1
chr4145039865145039877-3'-UTR,CDS,intron-Distal,intron-Proximal5.2630611.14897K562SND1
chr4145032241145032332-3'-UTR,intron-Distal4.6629216.24647HepG2SUB1
chr4145040865145040936-3'-UTR,CDS,intron-Distal,intron-Proximal4.753876.76328K562IGF2BP2
chr4145031621145031654-3'-UTR,intron-Distal3.984046.36204K562IGF2BP1
chr4145038019145038085-3'-UTR,CDS,intron-Distal4.572278.90122K562RPS3
chr4145032392145032469-3'-UTR,intron-Distal,intron-Proximal3.6493140.00590K562PUM2
chr4145031592145031624-3'-UTR,intron-Distal3.309676.78138K562YBX3
chr4145038031145038081-3'-UTR,CDS,intron-Distal5.5432727.28427K562SND1
chr4145042050145042115-intron-Distal3.626875.57983K562HNRNPL
chr4145035895145035922-3'-UTR,CDS,intron-Distal,intron-Proximal3.128598.97494K562SND1
chr4144935489144935597-intron-Distal4.329654.79379K562KHSRP
chr4145032158145032208-3'-UTR,intron-Distal,intron-Proximal3.3713522.32358K562PUM2
chr4145031799145031855-3'-UTR,intron-Distal3.283585.80916K562IGF2BP2
chr4145041642145041673-3'-UTR,CDS,intron-Distal,intron-Proximal3.015935.23563K562HNRNPL
chr4145060491145060533-intron-Distal5.059119.13169K562KHDRBS1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GYPB is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GYPB is not available on ENCORE database.

  • 114 RBPs can affect the levels of GYPB.  








The Knockdown/knockout RNA-Seq assay for GYPB is not available on ENCORE database.





114 RBPs can affect the gene expression of GYPB :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GYPBENSG00000250361.2273.69820493.37170-0.850107.802605.77780K562AARS
GYPBENSG00000250361.2713.91760287.802501.310607.861305.04960K562ADAR
GYPBENSG00000250361.21626.307701038.653000.646808.473806.50090K562AKAP8
GYPBENSG00000250361.21227.75930983.584300.319802.265501.67160K562AKAP8L
GYPBENSG00000250361.22270.93470838.150701.4379036.0087034.10210K562AQR
GYPBENSG00000250361.2803.077801031.98950-0.361803.649402.58840K562ATP5C1
GYPBENSG00000250361.21182.56840764.958200.628406.906204.53670K562CEBPZ
GYPBENSG00000250361.2515.16410380.072600.438702.724301.45430K562CIRBP
GYPBENSG00000250361.21638.953201124.901500.542904.630502.68530K562CKAP4
GYPBENSG00000250361.22720.56130874.164601.6378021.1051018.38160K562CNOT7
GYPBENSG00000250361.2705.40920877.12810-0.314302.526301.47090K562CPEB4
GYPBENSG00000250361.21754.859701139.987000.622209.406807.94210K562CPSF6
GYPBENSG00000250361.2624.99160301.257501.052706.533903.72230K562CPSF7
GYPBENSG00000250361.2587.07890307.817400.931408.073805.13820K562YBX3
GYPBENSG00000250361.23709.826801195.134501.6341057.8845054.53590K562CELF1
GYPBENSG00000250361.2807.583901109.06200-0.457704.028902.24170K562DDX19B
GYPBENSG00000250361.21419.68020879.312000.691006.338504.47120K562DDX21
GYPBENSG00000250361.2875.57080557.730700.6506010.373807.91190K562DDX27
GYPBENSG00000250361.2548.08360346.654100.660804.314502.97060K562DDX3X
GYPBENSG00000250361.21654.79490907.451300.8667023.4420021.73040K562DDX47
GYPBENSG00000250361.2533.25230315.510900.757006.352804.22090K562DHX30
GYPBENSG00000250361.2637.874801058.49710-0.7307012.3795010.24200K562DKC1
GYPBENSG00000250361.2616.28730321.239100.939905.635803.13270K562DNAJC2
GYPBENSG00000250361.21118.21660524.716501.0915012.5903010.10340K562EEF2
GYPBENSG00000250361.2717.08330506.930900.500302.432901.57840K562EFTUD2
GYPBENSG00000250361.2502.48010380.818800.399903.151101.85010K562EIF2S1
GYPBENSG00000250361.2466.52240631.18150-0.436103.828803.00380K562EIF2S2
GYPBENSG00000250361.2674.09020286.664601.233503.741202.55270K562EIF3A
GYPBENSG00000250361.2689.54060336.576601.034604.541403.53300K562EIF3G
GYPBENSG00000250361.2613.33350362.186300.759806.181904.96430K562EIF4A3
GYPBENSG00000250361.21555.75660971.864800.6787011.673509.81070K562EIF4G2
GYPBENSG00000250361.21320.38020917.775800.524603.366401.54060K562ESF1
GYPBENSG00000250361.21088.02980863.207100.333802.352401.57060K562FIP1L1
GYPBENSG00000250361.2766.45010468.898200.708806.242704.42920K562FKBP4
GYPBENSG00000250361.21362.19420983.095200.470403.918802.81560K562FTO
GYPBENSG00000250361.2521.11740297.576900.808209.090806.54540K562FUS
GYPBENSG00000250361.2533.91780376.661700.503204.372703.63610K562FXR1
GYPBENSG00000250361.21036.841101852.79230-0.837505.294102.38090K562FXR2
GYPBENSG00000250361.2497.26500339.036400.552503.643701.96410K562G3BP1
GYPBENSG00000250361.2650.30410448.632400.535503.043902.29620K562G3BP2
GYPBENSG00000250361.21228.77440494.286701.3137035.5768032.38830K562GLRX3
GYPBENSG00000250361.22369.723001088.417701.1224012.2036010.51770K562GPKOW
GYPBENSG00000250361.23378.02300841.096802.0057085.3354081.50750K562GRSF1
GYPBENSG00000250361.2519.41930285.086500.865404.504201.95490K562HLTF
GYPBENSG00000250361.21693.19600784.754101.109306.084103.49990K562HNRNPA0
GYPBENSG00000250361.21470.34280603.292801.2851028.6373025.85220K562HNRNPA1
GYPBENSG00000250361.21582.79010818.372600.951507.882805.36470K562HNRNPAB
GYPBENSG00000250361.21158.02070539.534701.1018019.9510018.42800K562HNRNPC
GYPBENSG00000250361.21068.71030709.970200.589904.911303.63270K562HNRNPM
GYPBENSG00000250361.21410.08160879.803500.680405.066002.61650K562IGF2BP1
GYPBENSG00000250361.2552.30790354.557200.639404.156702.78990K562IGF2BP2
GYPBENSG00000250361.2234.06740360.66010-0.623704.235902.69120K562IGF2BP3
GYPBENSG00000250361.21979.68790798.883801.309104.872502.95620K562ILF2
GYPBENSG00000250361.2650.13780294.449801.1426013.9384011.03730K562ILF3
GYPBENSG00000250361.2705.93210284.540701.3108018.5752015.18120K562KHDRBS1
GYPBENSG00000250361.2560.39910358.603500.644004.394001.97080K562KHSRP
GYPBENSG00000250361.21889.72250929.345101.023805.298403.95300K562KRR1
GYPBENSG00000250361.2735.83950547.504100.426402.812301.34780K562LIN28B
GYPBENSG00000250361.2247.42800481.41200-0.960309.112206.27820K562LSM11
GYPBENSG00000250361.2490.16250372.693500.395202.427201.63710K562MAGOH
GYPBENSG00000250361.2688.89940371.947800.8891011.520109.52920K562MATR3
GYPBENSG00000250361.2912.580701169.40120-0.357703.449302.41550K562MBNL1
GYPBENSG00000250361.22570.745201035.886201.3112031.7903028.57250K562MSI2
GYPBENSG00000250361.21837.67570519.668601.8221037.3752035.02730K562MTPAP
GYPBENSG00000250361.2619.46940297.907701.056106.087103.06490K562NFX1
GYPBENSG00000250361.21505.05630577.451101.3819060.3523057.63450K562NSUN2
GYPBENSG00000250361.2783.88300531.846600.559503.958401.68640K562PA2G4
GYPBENSG00000250361.21819.23060839.823601.115109.038306.81090K562PABPC1
GYPBENSG00000250361.22906.847801450.559601.0027016.7810014.78570K562PCBP3
GYPBENSG00000250361.2759.29870480.349500.660505.418302.83150K562PES1
GYPBENSG00000250361.21791.727801112.570300.687406.883605.62790K562POLR2G
GYPBENSG00000250361.21259.98900979.867700.362702.721101.90870K562PPIG
GYPBENSG00000250361.21315.24130778.203700.757005.481202.88630K562PPIL4
GYPBENSG00000250361.2318.69720483.78770-0.602204.318303.15110K562PSIP1
GYPBENSG00000250361.2599.40550362.090100.727107.928106.84460K562PTBP1
GYPBENSG00000250361.21399.948801128.000100.311502.510601.49740K562PUM1
GYPBENSG00000250361.21507.545001105.070500.448005.668704.27750K562PUM2
GYPBENSG00000250361.21661.90130975.548400.7684010.627709.61100K562PUS1
GYPBENSG00000250361.21513.79810797.658700.9242016.6837013.18440K562RBM17
GYPBENSG00000250361.21888.97870945.669600.998105.355002.44970K562DROSHA
GYPBENSG00000250361.2854.75960502.426800.766506.655705.37840K562RPS19
GYPBENSG00000250361.22177.64090780.256701.480603.273501.53980K562RPS3A
GYPBENSG00000250361.21256.74320504.318901.3172016.6164013.65250K562RRP9
GYPBENSG00000250361.21828.09090796.419001.198607.398204.81500K562SBDS
GYPBENSG00000250361.2821.17200422.076300.960107.909505.49940K562SERBP1
GYPBENSG00000250361.21321.80360569.718601.2141033.6671031.22390K562SF3A3
GYPBENSG00000250361.22084.726801035.085201.010009.714907.81270K562SF3B1
GYPBENSG00000250361.21424.95360769.035700.889704.292702.52630K562SFPQ
GYPBENSG00000250361.2743.13520310.394101.2594010.711608.38520K562SLBP
GYPBENSG00000250361.2549.97440418.585400.393702.277601.36810K562SRFBP1
GYPBENSG00000250361.21854.98580583.682001.6681085.7314082.44380K562SRPK2
GYPBENSG00000250361.21327.33900784.860400.757908.330206.29450K562SRSF7
GYPBENSG00000250361.21672.005301266.305100.400904.576402.59290K562SRSF9
GYPBENSG00000250361.2724.62890347.193601.0614018.0801015.01100K562SSB
GYPBENSG00000250361.21488.783901132.626500.394403.152901.68690K562SSRP1
GYPBENSG00000250361.21886.44880779.510701.274909.512406.64160K562STIP1
GYPBENSG00000250361.21440.31200925.162400.638509.566107.02980K562SUCLG1
GYPBENSG00000250361.21720.48300888.875300.952703.653601.44360K562SUGP2
GYPBENSG00000250361.21559.72160866.908000.847203.094701.55760K562SUPT6H
GYPBENSG00000250361.21279.31870477.519601.4216024.0069021.13730K562SUPV3L1
GYPBENSG00000250361.2649.27940359.260500.853708.983607.61310K562TARDBP
GYPBENSG00000250361.21025.99070465.300501.1407016.1480013.74080K562TIAL1
GYPBENSG00000250361.21345.454501009.940600.413703.308501.76640K562TRIP6
GYPBENSG00000250361.21533.898401054.588200.540404.695402.35120K562TRNAU1AP
GYPBENSG00000250361.21081.17500690.821500.646105.050802.65900K562TUFM
GYPBENSG00000250361.21574.82050505.448501.6395029.4142026.41840K562UCHL5
GYPBENSG00000250361.2877.97300612.279500.519906.660605.59940K562UPF1
GYPBENSG00000250361.2339.77830640.35400-0.914303.567201.66170K562UPF2
GYPBENSG00000250361.21434.94940523.915001.453506.320404.96370K562WDR3
GYPBENSG00000250361.21855.38000544.764101.7679095.7205092.55860K562WDR43
GYPBENSG00000250361.22028.43320993.340901.0299023.3338020.24630K562WRN
GYPBENSG00000250361.2718.48960514.771100.480903.278001.92620K562XRN2
GYPBENSG00000250361.21460.83680852.897900.776203.076301.38280K562YTHDC2
GYPBENSG00000250361.21849.67160944.063400.970207.400305.87230K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GYPB is not available on ENCORE database.





19 RBPs can affect the splicing of GYPB :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGYPBENSG00000250361.2chr4-144921535144921628144920563144920602144922337144922436-0.244000.000090.03018excludedK562WDR3
SEGYPBENSG00000250361.2chr4-144921535144921628144920563144920602144922337144922436-0.240000.000340.01339excludedK562AKAP8L
SEGYPBENSG00000250361.2chr4-144921535144921628144920563144920602144922337144922436-0.277000.000000.00018excludedK562DROSHA
SEGYPBENSG00000250361.2chr4-144920563144920602144918491144918787144940403144940477-0.060000.004220.05475excludedK562PUS1
SEGYPBENSG00000250361.2chr4-144922337144922436144920563144920602144940403144940455-0.464000.000040.01309excludedK562MTPAP
SEGYPBENSG00000250361.2chr4-1449223371449224361449205631449206021449404031449404550.397000.000120.03202includedK562APOBEC3C
SEGYPBENSG00000250361.2chr4-144918692144918787144917349144917457144920563144920602-0.084000.000020.01368excludedK562PPIL4
SEGYPBENSG00000250361.2chr4-144920563144920602144918491144918787144940403144940477-0.084000.000020.00983excludedK562SBDS
SEGYPBENSG00000250361.2chr4-1449223371449224361449205631449206021449404031449404550.427000.000000.00253includedK562PUM2
SEGYPBENSG00000250361.2chr4-1449223371449224361449205631449206021449404031449404550.436000.000000.00108includedK562EIF4G2
SEGYPBENSG00000250361.2chr4-144921535144921628144920563144920602144922337144922436-0.277000.000010.00419excludedK562EIF4G2
SEGYPBENSG00000250361.2chr4-144921535144921628144920563144920602144922337144922436-0.348000.000000.00003excludedK562UPF1
SEGYPBENSG00000250361.2chr4-1449215351449216281449205631449206021449223371449224360.139000.000010.00093includedK562HNRNPU
SEGYPBENSG00000250361.2chr4-144922337144922436144920563144920602144940403144940490-0.478000.000260.00954excludedK562AGGF1
SEGYPBENSG00000250361.2chr4-144921535144921628144920563144920602144922337144922436-0.252000.000000.00012excludedK562CPSF6
SEGYPBENSG00000250361.2chr4-144920563144920602144918491144918787144940403144940477-0.083000.000090.00576excludedK562SF3B1
SEGYPBENSG00000250361.2chr4-1449215351449216281449205631449206021449223371449224360.345000.000060.05028includedK562AARS
SEGYPBENSG00000250361.2chr4-144922337144922436144920563144920602144940403144940490-0.349000.000000.00039excludedK562ZC3H8
SEGYPBENSG00000250361.2chr4-1449223371449224361449205631449206021449404031449404900.290000.000990.01912includedK562HNRNPC
MXEGYPBENSG00000250361.2chr4-144923723144923847144929544144929602144922337144922436144940403144940477-0.155000.001760.048552includedK562UCHL5
MXEGYPBENSG00000250361.2chr4-144918692144918787144920563144920602144917349144917457144922337144922436-0.183000.000130.007192includedK562UCHL5
MXEGYPBENSG00000250361.2chr4-1449237231449238471449295441449296021449223371449224361449404031449404770.195000.000530.083791includedK562PUM2
MXEGYPBENSG00000250361.2chr4-1449186921449187871449205631449206021449173491449174571449404031449404770.178000.000570.021151includedK562PPIL4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GYPB is not avaliable on ENCORE database.