FGFR4

General Information

Gene Name : FGFR4
Gene ID : ENSG00000160867.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FGFR4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FGFR4	ENSG00000160867.14	0.00	0.00	0.00	ENCSR000AEF
HepG2	FGFR4	ENSG00000160867.14	207.94	49.41	128.68	ENCSR985KAT
K562	FGFR4	ENSG00000160867.14	11.51	4.69	8.10	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FGFR4 is not avaliable on ENCORE database.

Proteins bound to RNA

FGFR4 RNA is bound by 45 proteins.

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eCLIP assay for FGFR4 is not avaliable on ENCORE database.

45 proteins are bound to FGFR4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	176516580	176516638	+	3'-UTR,5'-UTR,CDS	4.20961	400.00000	HepG2	DDX3X
chr5	176513959	176514039	+	5'-UTR,intron-Proximal	5.54156	400.00000	HepG2	DDX3X
chr5	176513918	176513959	+	5'-UTR	5.71051	400.00000	HepG2	DDX3X
chr5	176517389	176517426	+	CDS,intron-Proximal	4.69909	400.00000	HepG2	DDX3X
chr5	176517436	176517501	+	3'-UTR,CDS	4.38523	82.23267	HepG2	DDX3X
chr5	176524754	176524867	+	3'-UTR	7.04973	75.59181	HepG2	UPF1
chr5	176516639	176516661	+	CDS	4.33285	75.48992	HepG2	DDX3X
chr5	176525003	176525078	+	3'-UTR	3.78852	71.46251	HepG2	PCBP2
chr5	176516555	176516580	+	3'-UTR,5'-UTR,intron-Proximal	3.67706	70.54560	HepG2	DDX3X
chr5	176516681	176516694	+	CDS	4.53205	68.01342	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 219 entries

eCLIP assay for FGFR4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FGFR4 is not available on ENCORE database.
113 RBPs can affect the levels of FGFR4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FGFR4 is not available on ENCORE database.

113 RBPs can affect the gene expression of FGFR4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FGFR4	ENSG00000160867.10	1151.97010	7993.00280	-2.79460	94.89250	93.02360	HepG2	SRFBP1
FGFR4	ENSG00000160867.10	4698.93170	2116.21030	1.15070	64.55030	62.32390	HepG2	TRIM56
FGFR4	ENSG00000160867.10	2354.70390	7077.00970	-1.58760	46.56740	44.94090	HepG2	RBM22
FGFR4	ENSG00000160867.10	4004.15300	1925.27790	1.05630	41.31670	38.68220	HepG2	PPIL4
FGFR4	ENSG00000160867.10	7465.80720	3237.88810	1.20510	40.12030	38.18180	HepG2	PUF60
FGFR4	ENSG00000160867.10	1893.19490	3451.36160	-0.86630	32.12320	30.05900	HepG2	PRPF4
FGFR4	ENSG00000160867.10	3496.90860	5454.32730	-0.64130	29.61130	27.95890	HepG2	CKAP4
FGFR4	ENSG00000160867.10	1772.78920	3374.85650	-0.92880	29.72240	27.61440	HepG2	EIF4G1
FGFR4	ENSG00000160867.10	6072.01870	3104.83630	0.96760	25.34870	23.63890	HepG2	SLBP
FGFR4	ENSG00000160867.10	1102.29920	552.05650	0.99750	24.09280	22.53240	K562	AGGF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 129 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FGFR4 is not available on ENCORE database.

24 RBPs can affect the splicing of FGFR4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	FGFR4	ENSG00000160867.10	chr5	+	176515239	176515515	176513916	176514034	176516550	176516694	-0.05500	0.00059	excluded	HepG2	NCBP2
SE	FGFR4	ENSG00000160867.10	chr5	+	176515239	176515515	176513916	176514034	176516550	176516694	-0.05200	0.00019	excluded	HepG2	DDX6
SE	FGFR4	ENSG00000160867.10	chr5	+	176517745	176517826	176516550	176516694	176517938	176518105	-0.07800	0.00009	excluded	HepG2	SF3B4
A5SS	FGFR4	ENSG00000160867.10	chr5	+	176523287	176523519	176523287	176523358	176523604	176523742	0.05100	0.00009	longer	HepG2	PRPF8
RI	FGFR4	ENSG00000160867.10	chr5	+	176517651	176517826	176517651	176517654	176517745	176517826	0.05300	0.00000	included	HepG2	PCBP2
RI	FGFR4	ENSG00000160867.10	chr5	+	176517651	176517826	176517651	176517654	176517745	176517826	0.07000	0.00000	included	HepG2	SF3A3
RI	FGFR4	ENSG00000160867.10	chr5	+	176517651	176517826	176517651	176517654	176517745	176517826	0.06300	0.00000	included	HepG2	U2AF2
RI	FGFR4	ENSG00000160867.10	chr5	+	176517651	176517826	176517651	176517654	176517745	176517826	0.13600	0.00000	included	HepG2	PRPF8
RI	FGFR4	ENSG00000160867.10	chr5	+	176517651	176517826	176517651	176517654	176517745	176517826	0.06400	0.00000	included	HepG2	U2AF1
RI	FGFR4	ENSG00000160867.10	chr5	+	176517651	176517826	176517651	176517654	176517745	176517826	0.12200	0.00000	included	HepG2	SF3B4

Showing 1 to 10 of 47 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FGFR4

General Information

Functions

Localization

Domains (AlphaFold: FGFR4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FGFR4 is not avaliable on ENCORE database.

45 proteins are bound to FGFR4 RNA:

eCLIP assay for FGFR4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FGFR4 is not available on ENCORE database.

113 RBPs can affect the gene expression of FGFR4 :

The Knockdown/knockout RNA-Seq assay for FGFR4 is not available on ENCORE database.

24 RBPs can affect the splicing of FGFR4 :

The Knockdown/knockout RNA-Seq assay for FGFR4 is not avaliable on ENCORE database.