EFCAB14

General Information

Gene Name : EFCAB14
Gene ID : ENSG00000159658.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: EFCAB14)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	EFCAB14	ENSG00000159658.10	42.63	39.63	41.13	ENCSR000AEF
HepG2	EFCAB14	ENSG00000159658.10	8.28	15.70	11.99	ENCSR985KAT
K562	EFCAB14	ENSG00000159658.10	28.55	32.95	30.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for EFCAB14 is not avaliable on ENCORE database.

Proteins bound to RNA

EFCAB14 RNA is bound by 20 proteins.

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eCLIP assay for EFCAB14 is not avaliable on ENCORE database.

20 proteins are bound to EFCAB14 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	47143629	47143762	-	3'-UTR,intron-Distal	3.97406	29.26925	K562	PUM2
chr1	47142158	47142247	-	3'-UTR,intron-Distal	5.04415	24.78916	K562	PUM2
chr1	47124364	47124410	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	6.05402	20.86620	K562	TROVE2
chr1	47143771	47143858	-	3'-UTR,intron-Distal,intron-Proximal	4.11676	18.49622	K562	PUM2
chr1	47130930	47130938	-	5'-UTR,CDS,intron-Distal	6.57767	17.27574	K562	TROVE2
chr1	47130927	47130930	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.57767	17.27574	K562	TROVE2
chr1	47133909	47134015	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.11738	13.13184	HepG2	DDX3X
chr1	47184592	47184677	-	5'-UTR,intron-Distal	5.35119	12.37934	HepG2	DDX3X
chr1	47141838	47141859	-	3'-UTR,intron-Distal	3.83736	10.75033	K562	YBX3
chr1	47141777	47141826	-	3'-UTR,intron-Distal	3.41955	9.30098	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 45 entries

eCLIP assay for EFCAB14 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for EFCAB14 is not available on ENCORE database.
89 RBPs can affect the levels of EFCAB14.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for EFCAB14 is not available on ENCORE database.

89 RBPs can affect the gene expression of EFCAB14 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
EFCAB14	ENSG00000159658.6	426.99450	958.07110	-1.16590	29.78170	27.97250	HepG2	HNRNPU
EFCAB14	ENSG00000159658.6	1952.38160	1157.10110	0.75460	25.76830	24.52470	HepG2	ZNF622
EFCAB14	ENSG00000159658.6	2970.28080	1740.21040	0.77120	17.69420	15.61240	K562	U2AF2
EFCAB14	ENSG00000159658.6	1953.45940	1243.29150	0.65180	15.26440	14.03510	HepG2	ETF1
EFCAB14	ENSG00000159658.6	1764.61120	1173.72750	0.58820	13.45080	12.56750	HepG2	SRFBP1
EFCAB14	ENSG00000159658.6	1958.08030	1068.62050	0.87360	13.63410	12.20250	HepG2	U2AF1
EFCAB14	ENSG00000159658.6	3797.37660	2568.93220	0.56370	13.53480	11.83960	K562	SF3A3
EFCAB14	ENSG00000159658.6	1286.66280	847.19550	0.60280	11.83900	10.71720	HepG2	PUS1
EFCAB14	ENSG00000159658.6	1473.75740	827.92100	0.83180	10.26380	8.89520	HepG2	PABPC4
EFCAB14	ENSG00000159658.6	676.82330	1015.75480	-0.58570	8.79940	7.82910	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for EFCAB14 is not available on ENCORE database.

18 RBPs can affect the splicing of EFCAB14 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.52300	0.00000	0.00000	included	K562	SRSF1
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.43300	0.00000	0.00000	included	K562	HNRNPA1
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.56700	0.00000	0.00000	included	HepG2	PTBP1
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.48700	0.00000	0.00000	included	HepG2	MATR3
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.57900	0.00000	0.00000	included	HepG2	SRSF1
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	-0.23800	0.00000	0.00034	excluded	K562	HNRNPU
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.43100	0.00000	0.00050	included	HepG2	DDX55
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	-0.31500	0.00000	0.00000	excluded	K562	ZC3H8
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.40600	0.00000	0.00000	included	K562	PTBP1
SE	EFCAB14	ENSG00000159658.6	chr1	-	47154024	47154216	47152455	47152542	47155258	47155363	0.25700	0.00001	0.00256	included	K562	MATR3

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

EFCAB14

General Information

Functions

Localization

Domains (AlphaFold: EFCAB14)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for EFCAB14 is not avaliable on ENCORE database.

20 proteins are bound to EFCAB14 RNA:

eCLIP assay for EFCAB14 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for EFCAB14 is not available on ENCORE database.

89 RBPs can affect the gene expression of EFCAB14 :

The Knockdown/knockout RNA-Seq assay for EFCAB14 is not available on ENCORE database.

18 RBPs can affect the splicing of EFCAB14 :

The Knockdown/knockout RNA-Seq assay for EFCAB14 is not avaliable on ENCORE database.