CLIP2

General Information

Gene Name       : CLIP2
Gene ID             : ENSG00000106665.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CLIP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CLIP2ENSG00000106665.153.1615.779.46ENCSR000AEF
HepG2CLIP2ENSG00000106665.1510.614.177.39ENCSR985KAT
K562CLIP2ENSG00000106665.152.001.701.85ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CLIP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CLIP2 RNA is bound by 20 proteins.  







eCLIP assay for CLIP2 is not avaliable on ENCORE database.





20 proteins are bound to CLIP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr77381874273818828+3'-UTR3.122703.77448HepG2IGF2BP3
chr77381874173818819+3'-UTR3.021604.66189HepG2UPF1
chr77381956673819623+3'-UTR4.333074.84422HepG2IGF2BP1
chr77381891673818995+3'-UTR3.619595.09017HepG2UPF1
chr77381851973818601+3'-UTR4.997246.71037HepG2UPF1
chr77381875473818834+3'-UTR3.990037.33618HepG2IGF2BP1
chr77381999673820059+3'-UTR4.767236.58335HepG2QKI
chr77381839173818450+3'-UTR4.060013.64119HepG2UPF1
chr77370382173703865+5'-UTR5.323978.17272HepG2DDX3X
chr77370402373704065+5'-UTR,intron-Proximal3.127463.38145HepG2DDX3X
chr77375326773753338+CDS,intron-Proximal4.176097.79455HepG2PPIG
chr77375275473752808+CDS,intron-Proximal3.075143.76090HepG2U2AF2
chr77379071373790837+CDS3.474734.65365HepG2GRWD1
chr77379101173791085+CDS4.107184.45558HepG2GRWD1
chr77377858873778697+CDS,intron-Proximal3.074294.93219HepG2PRPF8
chr77377859873778647+CDS,intron-Proximal3.388684.22242HepG2G3BP1
chr77375329673753378+CDS,intron-Proximal4.5208314.79390HepG2PRPF8
chr77379020973790332+CDS,intron-Proximal3.4491412.47924HepG2PPIG
chr77377450773774566+CDS3.356847.36645HepG2PPIG
chr77375290573753006+CDS3.244914.87174HepG2PPIG
chr77381145173811513+CDS3.879623.15232HepG2LIN28B
chr77377456673774610+CDS,intron-Proximal4.495618.98365HepG2PPIG
chr77379106573791136+CDS4.215673.88780HepG2G3BP1
chr77376820773768241+CDS,intron-Proximal3.660684.96634HepG2PPIG
chr77377858473778647+CDS,intron-Proximal4.5323917.88761HepG2PPIG
chr77373194073731996+CDS3.182213.80065HepG2PPIG
chr77370426473704340+intron-Distal3.266906.79749HepG2CSTF2T
chr77378053773780611+intron-Distal4.289805.08471HepG2HNRNPK
chr77378062373780715+intron-Distal5.259097.11359HepG2HNRNPK
chr77370502073705087+intron-Distal5.128768.56618HepG2CSTF2T
chr77378056073780710+intron-Distal3.033184.44773HepG2DDX59
chr77378071573780793+intron-Distal4.525965.62745HepG2HNRNPK
chr77377964673779700+intron-Distal3.760603.16310HepG2CSTF2T
chr77376809073768177+intron-Distal,intron-Proximal3.302635.13321HepG2RBFOX2
chr77370500673705077+intron-Distal3.505693.57490HepG2NKRF
chr77370609873706235+intron-Distal3.034914.70417HepG2HNRNPK
chr77371772973717801+intron-Distal3.258645.65257HepG2RBFOX2
chr77378493673785002+intron-Distal4.456973.82414HepG2HNRNPK
chr77377526973775407+intron-Distal3.824573.31570HepG2HNRNPK
chr77370419473704260+intron-Distal3.307044.11989HepG2FAM120A
chr77370419773704264+intron-Distal3.098056.21569HepG2CSTF2T
chr77377097673771058+intron-Distal,intron-Proximal4.768385.17615K562AQR
chr77370428373704352+intron-Distal4.130684.15139HepG2NKRF
chr77380076173800823+intron-Proximal4.213238.71432HepG2SF3B4
chr77379522173795264+intron-Proximal3.972414.71325HepG2RBM22
chr77370408673704131+intron-Proximal4.195534.61649HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CLIP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CLIP2 is not available on ENCORE database.

  • 112 RBPs can affect the levels of CLIP2.  








The Knockdown/knockout RNA-Seq assay for CLIP2 is not available on ENCORE database.





112 RBPs can affect the gene expression of CLIP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CLIP2ENSG00000106665.113255.638502381.146400.451203.622802.43870HepG2AKAP8
CLIP2ENSG00000106665.112765.847901626.008600.7663022.1380020.53810HepG2AUH
CLIP2ENSG00000106665.112585.876601870.717100.467003.285502.21670HepG2CCAR1
CLIP2ENSG00000106665.111199.822001523.31800-0.344405.330504.46250HepG2CKAP4
CLIP2ENSG00000106665.111782.467201033.253500.7866011.3079010.02260HepG2CPSF6
CLIP2ENSG00000106665.111958.397501540.829100.345902.846601.72580HepG2CPSF7
CLIP2ENSG00000106665.111970.76950851.378301.2108032.2106030.51730HepG2CELF1
CLIP2ENSG00000106665.111015.077601409.20590-0.473308.798207.46440HepG2DDX19B
CLIP2ENSG00000106665.11540.88090766.75910-0.503502.759302.08170HepG2DDX21
CLIP2ENSG00000106665.11514.94810751.13450-0.544602.512601.64490HepG2DDX24
CLIP2ENSG00000106665.112526.014603312.32920-0.391004.112402.55010HepG2DDX47
CLIP2ENSG00000106665.112506.398101173.344101.094908.413606.77000HepG2DDX59
CLIP2ENSG00000106665.113256.368801477.460101.1400011.3314010.18090HepG2DDX6
CLIP2ENSG00000106665.11472.29610641.73820-0.442303.131102.09080HepG2DHX30
CLIP2ENSG00000106665.11901.017301457.79250-0.6942014.5384013.24220HepG2DKC1
CLIP2ENSG00000106665.111301.28750665.356700.967608.837607.63380HepG2DNAJC21
CLIP2ENSG00000106665.113015.591601419.621501.0868019.8716018.38380HepG2EIF2S1
CLIP2ENSG00000106665.111050.128001691.85230-0.688004.947802.51630HepG2EIF3H
CLIP2ENSG00000106665.111109.524401568.51150-0.499502.160501.59300HepG2EIF4A3
CLIP2ENSG00000106665.111528.27830865.159100.8208011.6990010.09860HepG2EIF4G2
CLIP2ENSG00000106665.111166.457001621.03240-0.474804.396903.04800HepG2ESF1
CLIP2ENSG00000106665.111365.972201866.90630-0.450707.623906.70940HepG2ETF1
CLIP2ENSG00000106665.11884.986101488.88690-0.7505012.0280010.32660HepG2EWSR1
CLIP2ENSG00000106665.11647.623901305.13530-1.0110012.8120011.18000HepG2FUBP3
CLIP2ENSG00000106665.11927.40530655.971900.499502.613101.62520HepG2GNB2L1
CLIP2ENSG00000106665.111792.941301205.720600.5723012.1615010.80460HepG2HNRNPF
CLIP2ENSG00000106665.111305.18140833.942000.6461014.3222012.89990HepG2HNRNPL
CLIP2ENSG00000106665.11877.29550742.239600.241101.985801.46270HepG2HNRNPU
CLIP2ENSG00000106665.111661.351101187.299000.484606.559205.48670HepG2IGF2BP1
CLIP2ENSG00000106665.11955.736701501.53180-0.651702.609501.63940HepG2KHSRP
CLIP2ENSG00000106665.111318.539701976.56730-0.584102.756501.92790HepG2LARP4
CLIP2ENSG00000106665.111098.130901592.84010-0.536602.309601.72990HepG2MATR3
CLIP2ENSG00000106665.111939.64330907.784301.095308.181006.89310HepG2NOL12
CLIP2ENSG00000106665.11966.33270567.404400.768002.470101.44170HepG2NONO
CLIP2ENSG00000106665.11755.74150991.11190-0.391202.729001.98510HepG2NSUN2
CLIP2ENSG00000106665.112138.102801298.716800.719102.787101.89700HepG2PABPC1
CLIP2ENSG00000106665.11863.75700662.017900.383703.688802.85010HepG2PPIL4
CLIP2ENSG00000106665.111228.046701598.46710-0.380304.871904.18960HepG2PTBP1
CLIP2ENSG00000106665.111299.53700866.549100.584506.880805.99610HepG2PUF60
CLIP2ENSG00000106665.112379.87400919.203601.3723033.8368031.69550HepG2PUM2
CLIP2ENSG00000106665.111119.736101552.02690-0.471008.591207.60690HepG2PUS1
CLIP2ENSG00000106665.111196.371801731.02790-0.533007.297706.35480HepG2QKI
CLIP2ENSG00000106665.112770.071402176.882900.347603.227102.30900HepG2RBM15
CLIP2ENSG00000106665.111792.135201560.381800.199701.750201.31400HepG2RBM22
CLIP2ENSG00000106665.111020.388201571.07630-0.622604.120703.31150HepG2RBM25
CLIP2ENSG00000106665.111308.252401656.89330-0.340804.347803.59820HepG2RECQL
CLIP2ENSG00000106665.111841.068701298.730400.503304.390503.56010HepG2RPLP0
CLIP2ENSG00000106665.111125.06340660.995400.7672016.8632015.46840HepG2SAFB2
CLIP2ENSG00000106665.11602.521301106.26430-0.8766011.7752010.41320HepG2SF3B1
CLIP2ENSG00000106665.11867.341901664.08320-0.9401025.9790024.48160HepG2SF3B4
CLIP2ENSG00000106665.111183.20960830.860400.509908.699407.56450HepG2SLBP
CLIP2ENSG00000106665.111053.64380770.829200.450806.925805.97880HepG2SMN1
CLIP2ENSG00000106665.111568.24570767.169201.031406.176504.70320HepG2SMNDC1
CLIP2ENSG00000106665.11758.794801230.92820-0.698004.667203.64140HepG2SNRNP70
CLIP2ENSG00000106665.112295.250201762.382400.381006.848806.15830HepG2SRFBP1
CLIP2ENSG00000106665.11565.615101736.99460-1.6187059.7038058.15040HepG2SRSF1
CLIP2ENSG00000106665.112014.72300855.576401.2355016.0805014.74860HepG2SRSF5
CLIP2ENSG00000106665.111742.837701184.551500.5570011.7727010.50690HepG2SRSF7
CLIP2ENSG00000106665.111358.42920973.038600.481308.265907.28720HepG2SUCLG1
CLIP2ENSG00000106665.111864.339501275.676300.547306.575005.16650HepG2SUPT6H
CLIP2ENSG00000106665.11391.63670614.67190-0.650302.840802.15630HepG2SUPV3L1
CLIP2ENSG00000106665.11392.413001561.42270-1.9924079.9607077.48740HepG2TAF15
CLIP2ENSG00000106665.111118.527101434.58170-0.359002.764301.92900HepG2TIA1
CLIP2ENSG00000106665.111108.76230721.212900.620408.403307.61710HepG2TIAL1
CLIP2ENSG00000106665.111321.48370727.672400.8607021.5030020.11450HepG2TRIM56
CLIP2ENSG00000106665.111293.70660846.561800.611707.825106.23340HepG2TUFM
CLIP2ENSG00000106665.111254.197001616.37460-0.366003.045002.38730HepG2U2AF1
CLIP2ENSG00000106665.111490.84790896.059200.734405.590904.37320HepG2UBE2L3
CLIP2ENSG00000106665.111081.142901573.59290-0.541509.851708.83330HepG2UTP3
CLIP2ENSG00000106665.11740.546401153.05270-0.638806.169505.22870HepG2ZC3H8
CLIP2ENSG00000106665.112234.525601792.566100.317806.028705.30290HepG2ZNF622
CLIP2ENSG00000106665.11210.35600103.651801.021004.161102.63590K562ABCF1
CLIP2ENSG00000106665.11307.45180222.074200.469202.488301.94490K562AGGF1
CLIP2ENSG00000106665.11312.94940197.260400.665703.956801.57500K562AUH
CLIP2ENSG00000106665.11129.4467065.762500.976904.074902.42710K562BCCIP
CLIP2ENSG00000106665.11131.9096063.536801.053804.714903.44300K562BCLAF1
CLIP2ENSG00000106665.11173.5822069.383101.322906.842305.45080K562BOP1
CLIP2ENSG00000106665.11122.4853074.748000.712402.430201.45480K562CCAR1
CLIP2ENSG00000106665.11428.57060265.360300.691502.529901.41300K562CCDC124
CLIP2ENSG00000106665.11208.05210130.034300.678002.831501.38010K562CKAP4
CLIP2ENSG00000106665.11253.85450165.866100.613902.580001.51180K562CPEB4
CLIP2ENSG00000106665.11145.0087073.778800.974804.186203.21970K562CPSF6
CLIP2ENSG00000106665.11116.8097048.202101.276905.141403.63760K562CSTF2
CLIP2ENSG00000106665.11315.73710190.769700.726805.134203.65360K562DDX3X
CLIP2ENSG00000106665.11159.59350248.60790-0.639502.215701.44280K562DKC1
CLIP2ENSG00000106665.11326.89780209.558100.641404.838603.21670K562EIF2S1
CLIP2ENSG00000106665.11344.0183079.106302.1205029.4216027.52360K562EIF2S2
CLIP2ENSG00000106665.11136.57650199.31250-0.545302.174201.44280K562EIF4A3
CLIP2ENSG00000106665.11253.84700179.496700.499902.772601.61870K562EIF4B
CLIP2ENSG00000106665.11228.3102075.059301.6048011.665009.83820K562FMR1
CLIP2ENSG00000106665.11149.8040063.615601.235505.912904.52480K562FTO
CLIP2ENSG00000106665.1149.98540207.27750-2.0520018.2336016.78990K562FXR1
CLIP2ENSG00000106665.1114.3626051.62170-1.845704.322103.39480K562G3BP2
CLIP2ENSG00000106665.11195.1230070.444301.469709.374107.90480K562GPKOW
CLIP2ENSG00000106665.11157.7727095.453900.724902.680201.56020K562HNRNPF
CLIP2ENSG00000106665.1172.65920124.50620-0.777002.459001.30300K562HNRNPK
CLIP2ENSG00000106665.11256.20820124.758201.038104.713803.22420K562IGF2BP2
CLIP2ENSG00000106665.11212.89010126.864000.746704.149402.62020K562IGF2BP3
CLIP2ENSG00000106665.1181.14280131.03690-0.691402.590801.77630K562MAGOH
CLIP2ENSG00000106665.11162.6285068.759901.241806.411605.05130K562METAP2
CLIP2ENSG00000106665.11294.71080199.018400.566303.037001.75120K562NCBP2
CLIP2ENSG00000106665.11155.3778068.320301.185305.225403.29850K562NONO
CLIP2ENSG00000106665.1153.60590159.23580-1.570708.548507.08960K562PCBP3
CLIP2ENSG00000106665.1133.74980122.13700-1.855509.793008.32450K562POLR2G
CLIP2ENSG00000106665.11180.8846084.639801.095602.957002.10470K562PPIG
CLIP2ENSG00000106665.1131.2042067.39210-1.110802.547001.82740K562PRPF8
CLIP2ENSG00000106665.11232.3447095.822001.277708.007206.30280K562PSIP1
CLIP2ENSG00000106665.1190.33370204.56330-1.179206.446105.20080K562PUF60
CLIP2ENSG00000106665.1187.90200217.60350-1.307709.318207.29390K562PUM1
CLIP2ENSG00000106665.11396.99020213.189700.896907.919806.27340K562PUM2
CLIP2ENSG00000106665.11139.28760229.10830-0.718002.238701.73960K562PUS1
CLIP2ENSG00000106665.11223.02770122.038000.869805.191403.99800K562RBM22
CLIP2ENSG00000106665.11125.4525068.621700.870302.660901.86290K562RPS19
CLIP2ENSG00000106665.1148.17010108.83410-1.175904.230402.88010K562SAFB
CLIP2ENSG00000106665.11120.5568066.981600.847802.526901.59870K562SF3B1
CLIP2ENSG00000106665.1180.51610152.73530-0.923702.446101.32190K562SNRNP200
CLIP2ENSG00000106665.11128.3031067.328300.930203.258701.46140K562SRP68
CLIP2ENSG00000106665.1172.94450124.82140-0.775002.632301.94070K562SRSF1
CLIP2ENSG00000106665.11183.30720117.906400.636502.382301.41880K562SRSF5
CLIP2ENSG00000106665.1129.05380122.50970-2.0761011.474309.81230K562SYNCRIP
CLIP2ENSG00000106665.11222.06790126.308300.814004.388203.49020K562TARDBP
CLIP2ENSG00000106665.11249.00040121.843601.031007.292305.86130K562TIA1
CLIP2ENSG00000106665.11205.11460119.610200.778003.768002.46220K562TRA2A
CLIP2ENSG00000106665.11317.46250206.200400.622404.104202.55530K562TROVE2
CLIP2ENSG00000106665.1114.1198049.98710-1.823804.104002.71420K562U2AF1
CLIP2ENSG00000106665.1111.5159051.64250-2.164905.748404.59110K562U2AF2
CLIP2ENSG00000106665.11169.4783069.034601.295606.435304.80520K562UCHL5
CLIP2ENSG00000106665.11333.90070208.153900.681705.106404.16130K562UPF1
CLIP2ENSG00000106665.11359.05010133.864501.4233013.4689011.11590K562UTP3
CLIP2ENSG00000106665.1166.05240158.96890-1.267105.115802.79410K562XRCC6
CLIP2ENSG00000106665.11132.3050070.331400.911503.229401.88760K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CLIP2 is not available on ENCORE database.





6 RBPs can affect the splicing of CLIP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECLIP2ENSG00000106665.11chr7+7378726173787366737785847377864573790216737911520.211000.000360.03615includedHepG2G3BP1
SECLIP2ENSG00000106665.11chr7+7378726173787366737785847377864573790216737911520.422000.000000.00002includedHepG2U2AF1
SECLIP2ENSG00000106665.11chr7+7379179073791965737902167379115273795135737951930.069000.000020.00082includedHepG2HNRNPK
SECLIP2ENSG00000106665.11chr7+7378726173787366737785847377864573790216737911520.674000.000010.00025includedHepG2U2AF2
MXECLIP2ENSG00000106665.11chr7+73768209737683347377160973771807737527777375333473774504737746080.186000.000150.070641includedHepG2NKRF
MXECLIP2ENSG00000106665.11chr7+73752777737533347376820973768334737318097373199773770739737709530.393000.000000.000461includedHepG2XPO5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CLIP2 is not avaliable on ENCORE database.