CCDC18

General Information

Gene Name : CCDC18
Gene ID : ENSG00000122483.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCDC18)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC18	ENSG00000122483.17	18.35	14.50	16.43	ENCSR000AEF
HepG2	CCDC18	ENSG00000122483.17	6.82	8.83	7.83	ENCSR985KAT
K562	CCDC18	ENSG00000122483.17	16.90	16.36	16.63	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC18 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC18 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for CCDC18 is not avaliable on ENCORE database.

10 proteins are bound to CCDC18 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	93675994	93676085	+	intron-Distal	3.37290	8.66097	K562	KHSRP
chr1	93717555	93717684	+	intron-Distal	5.71324	8.10458	K562	QKI
chr1	93676124	93676184	+	intron-Distal	3.89445	7.90970	K562	KHSRP
chr1	93717602	93717702	+	intron-Distal	4.21377	7.56258	HepG2	QKI
chr1	93675716	93675812	+	intron-Distal	4.93781	7.01496	K562	KHSRP
chr1	93676085	93676124	+	intron-Distal	4.72724	6.73684	K562	KHSRP
chr1	93673432	93673525	+	intron-Distal	4.51599	6.51328	K562	KHSRP
chr1	93680432	93680510	+	3'-UTR,5'-UTR,CDS	3.36084	6.36421	K562	ZNF622
chr1	93714036	93714166	+	intron-Distal	4.70264	6.34785	K562	KHSRP
chr1	93713982	93714036	+	intron-Distal	4.45001	6.09994	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 27 entries

eCLIP assay for CCDC18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC18 is not available on ENCORE database.
114 RBPs can affect the levels of CCDC18.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCDC18 is not available on ENCORE database.

114 RBPs can affect the gene expression of CCDC18 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC18	ENSG00000122483.13	346.00580	1005.04530	-1.53840	42.67950	40.49350	K562	AGGF1
CCDC18	ENSG00000122483.13	109.08940	431.53920	-1.98400	26.86990	25.32560	HepG2	BOP1
CCDC18	ENSG00000122483.13	373.67290	1063.53900	-1.50900	26.66470	25.04080	K562	AQR
CCDC18	ENSG00000122483.13	424.85210	1037.23590	-1.28770	22.46020	20.93720	K562	PUS1
CCDC18	ENSG00000122483.13	69.32950	323.07100	-2.22030	21.72580	20.55020	HepG2	ZNF622
CCDC18	ENSG00000122483.13	463.40230	1010.53960	-1.12480	21.02380	19.33600	K562	RBM15
CCDC18	ENSG00000122483.13	387.73270	141.03210	1.45890	17.23340	16.10590	HepG2	NELFE
CCDC18	ENSG00000122483.13	147.09560	417.76560	-1.50590	16.63630	15.11670	HepG2	TARDBP
CCDC18	ENSG00000122483.13	440.83620	1045.77990	-1.24630	16.70520	14.85740	K562	AKAP8L
CCDC18	ENSG00000122483.13	400.97340	820.33850	-1.03270	14.53540	12.67810	K562	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 144 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC18 is not available on ENCORE database.

15 RBPs can affect the splicing of CCDC18 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC18	ENSG00000122483.13	chr1	+	93702818	93702937			93701804	93701947	93704866	93705030	0.54600	0.00000	0.00001	included	K562	HNRNPL
MXE	CCDC18	ENSG00000122483.13	chr1	+	93676358	93676483	93677657	93677818	93672663	93672955	93680302	93680523	0.43000	0.00000	0.00001	1included	HepG2	U2AF2
MXE	CCDC18	ENSG00000122483.13	chr1	+	93676406	93676483	93677657	93677818	93672663	93672955	93680302	93680523	0.61700	0.00000	0.00000	1included	HepG2	U2AF2
SE	CCDC18	ENSG00000122483.13	chr1	+	93671066	93671188			93667448	93667545	93672663	93672955	-0.67700	0.00001	0.00021	excluded	HepG2	U2AF2
SE	CCDC18	ENSG00000122483.13	chr1	+	93702818	93702937			93701804	93701947	93704866	93705030	-0.20000	0.00001	0.00312	excluded	K562	EIF3G
SE	CCDC18	ENSG00000122483.13	chr1	+	93671066	93671188			93667448	93667545	93672663	93672955	0.51200	0.00002	0.00189	included	K562	FXR1
SE	CCDC18	ENSG00000122483.13	chr1	+	93677657	93677818			93676406	93676483	93680299	93680523	-0.13300	0.00027	0.00466	excluded	HepG2	U2AF2
MXE	CCDC18	ENSG00000122483.13	chr1	+	93691889	93692006	93697982	93698150	93687415	93687493	93701804	93701947	0.12200	0.00030	0.00784	1included	K562	DROSHA
SE	CCDC18	ENSG00000122483.13	chr1	+	93702818	93702937			93701804	93701947	93704866	93705030	0.34800	0.00038	0.03128	included	HepG2	HNRNPL
MXE	CCDC18	ENSG00000122483.13	chr1	+	93676358	93676483	93677657	93677818	93672663	93672955	93680302	93680523	0.14100	0.00043	0.01456	1included	K562	FXR2

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC18

General Information

Functions

Localization

Domains (AlphaFold: CCDC18)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC18 is not avaliable on ENCORE database.

10 proteins are bound to CCDC18 RNA:

eCLIP assay for CCDC18 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC18 is not available on ENCORE database.

114 RBPs can affect the gene expression of CCDC18 :

The Knockdown/knockout RNA-Seq assay for CCDC18 is not available on ENCORE database.

15 RBPs can affect the splicing of CCDC18 :

The Knockdown/knockout RNA-Seq assay for CCDC18 is not avaliable on ENCORE database.