C17orf80

General Information

Gene Name : C17orf80
Gene ID : ENSG00000141219.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C17orf80)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C17orf80	ENSG00000141219.15	15.51	14.21	14.86	ENCSR000AEF
HepG2	C17orf80	ENSG00000141219.15	18.36	26.83	22.59	ENCSR985KAT
K562	C17orf80	ENSG00000141219.15	16.31	18.64	17.48	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C17orf80 is not avaliable on ENCORE database.

Proteins bound to RNA

C17orf80 RNA is bound by 7 proteins.

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eCLIP assay for C17orf80 is not avaliable on ENCORE database.

7 proteins are bound to C17orf80 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	71232196	71232291	+	CDS,intron-Distal	4.22830	6.84316	HepG2	BCLAF1
chr17	71229111	71229214	+	5'-UTR,intron-Distal	4.88668	6.57216	HepG2	PRPF4
chr17	71239081	71239178	+	CDS,intron-Proximal	4.87823	5.05356	HepG2	PRPF8
chr17	71232920	71233065	+	CDS,intron-Distal	3.33166	4.70209	K562	YBX3
chr17	71229284	71229435	+	5'-UTR,intron-Proximal	3.17131	4.20336	HepG2	AQR
chr17	71229421	71229463	+	5'-UTR	4.42259	3.89826	HepG2	BCLAF1
chr17	71233030	71233132	+	CDS,intron-Distal	3.72828	3.12746	HepG2	GRWD1
chr17	71245023	71245079	+	3'-UTR	3.85477	3.10834	HepG2	CSTF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 8 of 8 entries

eCLIP assay for C17orf80 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C17orf80 is not available on ENCORE database.
61 RBPs can affect the levels of C17orf80.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C17orf80 is not available on ENCORE database.

61 RBPs can affect the gene expression of C17orf80 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C17orf80	ENSG00000141219.11	293.98050	795.02850	-1.43530	26.30360	24.66330	K562	AGGF1
C17orf80	ENSG00000141219.11	364.73130	799.37490	-1.13200	20.06680	18.42950	K562	RBM15
C17orf80	ENSG00000141219.11	335.51630	820.50280	-1.29010	19.81500	18.38910	K562	PUS1
C17orf80	ENSG00000141219.11	857.14210	461.68230	0.89250	15.16720	13.86220	K562	FXR1
C17orf80	ENSG00000141219.11	1661.77430	1071.62310	0.63280	13.48070	12.15180	K562	DDX47
C17orf80	ENSG00000141219.11	416.60400	827.24950	-0.98960	13.75220	12.12710	K562	AKAP8L
C17orf80	ENSG00000141219.11	1429.13050	1021.26820	0.48470	7.72980	7.03180	HepG2	SRSF1
C17orf80	ENSG00000141219.11	2035.60250	1502.22150	0.43830	7.93990	7.01150	HepG2	ETF1
C17orf80	ENSG00000141219.11	870.67660	571.31520	0.60780	7.12040	5.78640	K562	SYNCRIP
C17orf80	ENSG00000141219.11	520.43620	877.96660	-0.75440	6.54790	5.15370	K562	KIF1C
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C17orf80 is not available on ENCORE database.

3 RBPs can affect the splicing of C17orf80 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	C17orf80	ENSG00000141219.11	chr17	+	71238382	71238490	71231614	71233134	71239034	71239142	0.24700	0.00075	0.05809	included	K562	SUPV3L1
A3SS	C17orf80	ENSG00000141219.11	chr17	+	71243349	71243594	71243379	71243594	71239034	71239142	0.08900	0.00280	0.01734	longer	K562	AQR
SE	C17orf80	ENSG00000141219.11	chr17	+	71231614	71233134	71229358	71229464	71238382	71238490	-0.14900	0.00300	0.09469	excluded	HepG2	MATR3

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C17orf80

General Information

Functions

Localization

Domains (AlphaFold: C17orf80)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C17orf80 is not avaliable on ENCORE database.

7 proteins are bound to C17orf80 RNA:

eCLIP assay for C17orf80 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C17orf80 is not available on ENCORE database.

61 RBPs can affect the gene expression of C17orf80 :

The Knockdown/knockout RNA-Seq assay for C17orf80 is not available on ENCORE database.

3 RBPs can affect the splicing of C17orf80 :

The Knockdown/knockout RNA-Seq assay for C17orf80 is not avaliable on ENCORE database.