TRAF3IP2-AS1

General Information

Gene Name : TRAF3IP2-AS1
Gene ID : ENSG00000231889.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRAF3IP2-AS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRAF3IP2-AS1	ENSG00000231889.7	2.59	3.45	3.02	ENCSR000AEF
HepG2	TRAF3IP2-AS1	ENSG00000231889.7	6.43	8.55	7.49	ENCSR985KAT
K562	TRAF3IP2-AS1	ENSG00000231889.7	3.17	4.33	3.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRAF3IP2-AS1 is not avaliable on ENCORE database.

Proteins bound to RNA

TRAF3IP2-AS1 RNA is bound by 9 proteins.

eCLIP assay for TRAF3IP2-AS1 is not avaliable on ENCORE database.

9 proteins are bound to TRAF3IP2-AS1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	111804996	111805065	+	intron-Distal	3.48258	7.76099	HepG2	NKRF
chr6	111805015	111805073	+	intron-Distal	3.33565	3.48399	HepG2	CSTF2T
chr6	111876124	111876246	+	intron-Distal	3.35321	4.98044	HepG2	CSTF2
chr6	111885321	111885401	+	intron-Distal	4.27650	10.56931	HepG2	HNRNPL
chr6	111805280	111805347	+	intron-Distal,intron-Proximal	3.84848	3.06347	K562	NONO
chr6	111824775	111824902	+	intron-Distal,polyA_site	3.12967	4.05766	HepG2	CSTF2
chr6	111827831	111827896	+	intron-Distal	3.48666	4.33009	HepG2	SUGP2
chr6	111804919	111805008	+	intron-Distal,intron-Proximal	3.27469	6.89356	HepG2	CSTF2T
chr6	111805260	111805328	+	intron-Distal,intron-Proximal	3.03087	6.22789	HepG2	PCBP2
chr6	111857570	111857617	+	intron-Distal	3.34136	3.94088	HepG2	QKI
chr6	111826461	111826531	+	intron-Distal	3.89257	3.04224	HepG2	SUGP2
chr6	111805012	111805109	+	intron-Distal	4.08503	3.05512	HepG2	PRPF4
chr6	111816964	111817150	+	intron-Distal	3.63634	4.23286	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for TRAF3IP2-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRAF3IP2-AS1 is not available on ENCORE database.
31 RBPs can affect the levels of TRAF3IP2-AS1.

The Knockdown/knockout RNA-Seq assay for TRAF3IP2-AS1 is not available on ENCORE database.

31 RBPs can affect the gene expression of TRAF3IP2-AS1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRAF3IP2-AS1	ENSG00000231889.3	92.21390	201.02610	-1.12430	5.28200	4.57570	HepG2	AKAP1
TRAF3IP2-AS1	ENSG00000231889.3	94.03440	158.02620	-0.74890	2.73800	1.96920	HepG2	CIRBP
TRAF3IP2-AS1	ENSG00000231889.3	63.14010	111.56790	-0.82130	3.05740	2.36570	HepG2	CKAP4
TRAF3IP2-AS1	ENSG00000231889.3	76.10340	162.32470	-1.09290	4.31680	3.35640	HepG2	CNOT7
TRAF3IP2-AS1	ENSG00000231889.3	67.32830	192.56490	-1.51610	9.07920	8.00100	HepG2	DDX3X
TRAF3IP2-AS1	ENSG00000231889.3	44.14210	73.72570	-0.74000	1.90750	1.34760	HepG2	DNAJC2
TRAF3IP2-AS1	ENSG00000231889.3	81.18170	159.01940	-0.97000	4.05290	3.34500	HepG2	EIF2S1
TRAF3IP2-AS1	ENSG00000231889.3	108.66730	171.10590	-0.65500	1.96530	1.37870	HepG2	EIF4B
TRAF3IP2-AS1	ENSG00000231889.3	109.92030	177.31600	-0.68990	2.49110	1.83380	HepG2	FXR1
TRAF3IP2-AS1	ENSG00000231889.3	89.34430	164.48140	-0.88050	3.67850	2.91520	HepG2	G3BP1
TRAF3IP2-AS1	ENSG00000231889.3	94.28600	167.18990	-0.82640	3.28640	2.55650	HepG2	IGF2BP2
TRAF3IP2-AS1	ENSG00000231889.3	80.54520	156.90800	-0.96200	2.20180	1.33410	HepG2	IGF2BP3
TRAF3IP2-AS1	ENSG00000231889.3	99.53480	168.16790	-0.75660	2.58890	1.62340	HepG2	KHSRP
TRAF3IP2-AS1	ENSG00000231889.3	100.79570	177.37800	-0.81540	3.36470	2.64100	HepG2	MAGOH
TRAF3IP2-AS1	ENSG00000231889.3	109.37370	178.36910	-0.70560	2.47710	1.87700	HepG2	MATR3
TRAF3IP2-AS1	ENSG00000231889.3	71.00980	182.56940	-1.36240	7.44060	6.42690	HepG2	NCBP2
TRAF3IP2-AS1	ENSG00000231889.3	64.39210	162.58390	-1.33620	6.95280	5.81480	HepG2	PABPC4
TRAF3IP2-AS1	ENSG00000231889.3	63.96170	149.57370	-1.22560	6.83780	5.95170	HepG2	PCBP1
TRAF3IP2-AS1	ENSG00000231889.3	59.88160	152.18780	-1.34570	7.48970	6.67710	HepG2	PTBP1
TRAF3IP2-AS1	ENSG00000231889.3	84.82810	129.81280	-0.61380	2.48470	1.91610	HepG2	PUM1
TRAF3IP2-AS1	ENSG00000231889.3	57.67530	113.67510	-0.97890	3.93750	3.22750	HepG2	PUS1
TRAF3IP2-AS1	ENSG00000231889.3	154.14810	88.25890	0.80440	3.44800	2.69870	HepG2	RPLP0
TRAF3IP2-AS1	ENSG00000231889.3	97.46230	158.46330	-0.70120	2.90050	2.29800	HepG2	SF3B4
TRAF3IP2-AS1	ENSG00000231889.3	96.76090	165.39480	-0.77340	3.37790	2.86890	HepG2	SRSF1
TRAF3IP2-AS1	ENSG00000231889.3	94.91460	137.32910	-0.53290	1.90180	1.36850	HepG2	SUCLG1
TRAF3IP2-AS1	ENSG00000231889.3	94.84420	148.64510	-0.64820	2.55510	2.01420	HepG2	TAF15
TRAF3IP2-AS1	ENSG00000231889.3	49.12960	81.35340	-0.72760	2.04470	1.54590	HepG2	TRIM56
TRAF3IP2-AS1	ENSG00000231889.3	58.13130	126.42040	-1.12080	3.56650	2.61030	HepG2	UBE2L3
TRAF3IP2-AS1	ENSG00000231889.3	119.70790	70.89550	0.75570	2.69380	2.03040	HepG2	ZC3H8
TRAF3IP2-AS1	ENSG00000231889.3	103.16770	51.48420	1.00270	3.64240	2.90770	K562	DDX47
TRAF3IP2-AS1	ENSG00000231889.3	98.62610	58.51080	0.75320	2.02460	1.33920	K562	HSPD1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRAF3IP2-AS1 is not available on ENCORE database.

1 RBPs can affect the splicing of TRAF3IP2-AS1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	TRAF3IP2-AS1	ENSG00000231889.3	chr6	+	111805946	111806064			111804764	111804868	111895823	111896005	0.23900	0.00082	0.08567	included	HepG2	PCBP2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRAF3IP2-AS1

General Information

Functions

Localization

Domains (AlphaFold: TRAF3IP2-AS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRAF3IP2-AS1 is not avaliable on ENCORE database.

9 proteins are bound to TRAF3IP2-AS1 RNA:

eCLIP assay for TRAF3IP2-AS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRAF3IP2-AS1 is not available on ENCORE database.

31 RBPs can affect the gene expression of TRAF3IP2-AS1 :

The Knockdown/knockout RNA-Seq assay for TRAF3IP2-AS1 is not available on ENCORE database.

1 RBPs can affect the splicing of TRAF3IP2-AS1 :

The Knockdown/knockout RNA-Seq assay for TRAF3IP2-AS1 is not avaliable on ENCORE database.