SYN1

General Information

Gene Name       : SYN1
Gene ID             : ENSG00000008056.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SYN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SYN1ENSG00000008056.130.920.110.52ENCSR000AEF
HepG2SYN1ENSG00000008056.130.000.000.00ENCSR985KAT
K562SYN1ENSG00000008056.130.100.190.15ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SYN1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on SYN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SYN1 is not avaliable on ENCORE database.






NO known proteins are bound to SYN1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for SYN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SYN1 is not available on ENCORE database.

  • 26 RBPs can affect the levels of SYN1.  








The Knockdown/knockout RNA-Seq assay for SYN1 is not available on ENCORE database.





26 RBPs can affect the gene expression of SYN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SYN1ENSG00000008056.815.565700.0000099999.999903.689303.08700HepG2AKAP1
SYN1ENSG00000008056.816.011101.088503.878603.537302.80110HepG2CKAP4
SYN1ENSG00000008056.815.865400.0000099999.999904.430003.66270HepG2DDX6
SYN1ENSG00000008056.88.837000.0000099999.999902.518901.67870HepG2PABPC1
SYN1ENSG00000008056.811.307800.0000099999.999902.775002.06930HepG2RAVER1
SYN1ENSG00000008056.859.4930018.800401.661904.863503.25950K562CCDC124
SYN1ENSG00000008056.876.7719020.079301.934805.350703.25910K562CKAP4
SYN1ENSG00000008056.836.365506.488502.486504.519502.42450K562FASTKD2
SYN1ENSG00000008056.880.5087029.284401.458903.747302.74840K562FMR1
SYN1ENSG00000008056.861.2014024.821601.301902.968702.02050K562FTO
SYN1ENSG00000008056.885.8758027.477901.643905.442704.33390K562GPKOW
SYN1ENSG00000008056.833.0840011.098701.575602.068301.40820K562GRSF1
SYN1ENSG00000008056.845.467504.675303.281607.174406.25700K562HNRNPC
SYN1ENSG00000008056.834.6308010.480001.724302.812201.87430K562HNRNPM
SYN1ENSG00000008056.831.540805.918002.413903.802402.52680K562IGF2BP2
SYN1ENSG00000008056.850.7399015.472001.713403.058101.55440K562ILF2
SYN1ENSG00000008056.8138.6293023.463702.562605.553104.17250K562KRR1
SYN1ENSG00000008056.824.894604.520502.461203.375501.80490K562LARP7
SYN1ENSG00000008056.8100.9052026.821701.911405.231004.00360K562METAP2
SYN1ENSG00000008056.841.8661016.230101.367002.522501.99870K562PUS1
SYN1ENSG00000008056.821.111103.820902.465902.970101.94150K562RCC2
SYN1ENSG00000008056.858.2041013.044402.157605.421104.30810K562SF3A3
SYN1ENSG00000008056.8178.8356026.133902.774504.015302.83150K562SF3B1
SYN1ENSG00000008056.843.8978013.364401.715703.493002.45710K562SRPK2
SYN1ENSG00000008056.847.8211015.294601.644503.288101.89600K562STAU1
SYN1ENSG00000008056.827.316104.279602.674103.897302.73660K562TRIM56
SYN1ENSG00000008056.858.0360016.906901.779204.896903.17560K562WRN
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SYN1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SYN1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SYN1 is not avaliable on ENCORE database.