RP11-84A19.4

General Information

Gene Name : RP11-84A19.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-84A19.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-84A19.4 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-84A19.4 RNA is bound by 19 proteins.

eCLIP assay for RP11-84A19.4 is not avaliable on ENCORE database.

19 proteins are bound to RP11-84A19.4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	32381518	32381564	-	CDS,intron-Distal	6.97998	132.83955	K562	LIN28B
chr1	32372280	32372375	-	3'-UTR,intron-Distal	4.23270	400.00000	K562	UPF1
chr1	32372092	32372145	-	3'-UTR,intron-Distal	3.08361	4.11240	K562	TIA1
chr1	32373177	32373220	-	3'-UTR,intron-Distal	4.38525	24.55852	K562	FAM120A
chr1	32372819	32372834	-	3'-UTR,intron-Distal	5.40740	44.66328	K562	YBX3
chr1	32381564	32381590	-	CDS,intron-Distal,intron-Proximal	7.07590	147.79219	K562	LIN28B
chr1	32377298	32377427	-	3'-UTR,CDS,intron-Distal	3.17896	59.16021	K562	UPF1
chr1	32374308	32374328	-	3'-UTR,intron-Distal,intron-Proximal	4.51313	49.67350	K562	YBX3
chr1	32374470	32374521	-	3'-UTR,CDS,intron-Distal	3.27263	20.86081	K562	YBX3
chr1	32374385	32374444	-	3'-UTR,intron-Distal,intron-Proximal	3.34729	19.05694	K562	YBX3
chr1	32373545	32373601	-	3'-UTR,intron-Distal	3.38263	36.48345	K562	UPF1
chr1	32373448	32373480	-	3'-UTR,intron-Distal	3.36117	12.30326	K562	UPF1
chr1	32372788	32372796	-	3'-UTR,intron-Distal	4.69941	21.38601	K562	YBX3
chr1	32375708	32375714	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.72939	10.16304	K562	LIN28B
chr1	32374343	32374358	-	3'-UTR,intron-Distal,intron-Proximal	5.60851	51.66867	K562	LIN28B
chr1	32384598	32384705	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.44141	3.61668	HepG2	IGF2BP1
chr1	32374331	32374498	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.38955	7.72566	K562	ZNF800
chr1	32372279	32372356	-	3'-UTR,intron-Distal	6.22611	400.00000	K562	EIF4G2
chr1	32373405	32373429	-	3'-UTR,intron-Distal	5.38984	18.13060	K562	UPF1
chr1	32373907	32373999	-	3'-UTR,intron-Distal	3.02065	7.34578	HepG2	PCBP2
chr1	32374547	32374561	-	3'-UTR,CDS,intron-Distal	3.21166	16.64459	K562	UPF1
chr1	32385224	32385273	-	3'-UTR,intron-Distal,intron-Proximal	3.12567	5.18858	K562	U2AF2
chr1	32372383	32372408	-	3'-UTR,intron-Distal	3.51150	4.85120	HepG2	IGF2BP1
chr1	32375684	32375714	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.35254	25.84808	K562	UPF1
chr1	32373414	32373435	-	3'-UTR,intron-Distal	3.99699	21.89623	K562	FAM120A
chr1	32385253	32385314	-	3'-UTR,intron-Distal,intron-Proximal	4.17695	7.33504	K562	SF3B4
chr1	32374391	32374426	-	3'-UTR,intron-Distal,intron-Proximal	3.45366	3.71972	K562	TARDBP
chr1	32377321	32377338	-	3'-UTR,CDS,intron-Distal	3.32332	27.99688	K562	FAM120A
chr1	32372554	32372594	-	3'-UTR,intron-Distal	4.14192	5.27876	K562	IGF2BP1
chr1	32371931	32372019	-	intron-Distal,intron-Proximal	3.70293	3.11181	HepG2	CSTF2
chr1	32372672	32372695	-	3'-UTR,intron-Distal	4.16308	12.32818	K562	YBX3
chr1	32384575	32384625	-	CDS,intron-Distal,intron-Proximal	4.35697	16.81702	K562	LIN28B
chr1	32381538	32381589	-	CDS,intron-Distal,intron-Proximal	5.44749	15.60933	HepG2	LIN28B
chr1	32377161	32377225	-	intron-Distal,intron-Proximal	3.75922	6.79537	K562	AQR
chr1	32373075	32373163	-	3'-UTR,intron-Distal	4.13175	63.46901	K562	FAM120A
chr1	32372286	32372376	-	3'-UTR,intron-Distal	4.14225	18.51428	K562	IGF2BP1
chr1	32385289	32385410	-	intron-Distal,intron-Proximal	3.46067	6.60316	K562	KHSRP
chr1	32372834	32372856	-	3'-UTR,intron-Distal	3.12561	6.19654	K562	YBX3
chr1	32377133	32377182	-	intron-Distal	3.95318	3.02181	K562	PRPF8
chr1	32374387	32374439	-	3'-UTR,intron-Distal,intron-Proximal	3.09876	10.16058	K562	UPF1
chr1	32377296	32377320	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.98982	12.23067	K562	LIN28B
chr1	32373982	32374011	-	3'-UTR,intron-Distal	3.28486	18.77175	K562	TIA1
chr1	32372297	32372393	-	3'-UTR,intron-Distal	3.89928	8.16363	K562	SRSF7
chr1	32374314	32374343	-	3'-UTR,intron-Distal,intron-Proximal	6.09943	71.27946	K562	LIN28B
chr1	32375636	32375693	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.67593	6.64703	K562	TARDBP
chr1	32374358	32374368	-	3'-UTR,intron-Distal,intron-Proximal	5.34558	35.89822	K562	LIN28B
chr1	32384615	32384671	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.13053	20.11646	K562	TIA1
chr1	32373530	32373559	-	3'-UTR,intron-Distal	4.03943	51.79757	K562	FAM120A
chr1	32372995	32373050	-	3'-UTR,intron-Distal	3.98944	26.25273	K562	UPF1
chr1	32373508	32373530	-	3'-UTR,intron-Distal	4.62244	36.42469	K562	FAM120A
chr1	32384569	32384575	-	CDS,intron-Distal,intron-Proximal	4.96369	27.11650	K562	LIN28B
chr1	32374364	32374376	-	3'-UTR,intron-Distal,intron-Proximal	3.47560	16.08103	K562	YBX3
chr1	32373082	32373158	-	3'-UTR,intron-Distal	3.29102	28.53430	K562	UPF1
chr1	32377296	32377298	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.79747	24.53344	K562	UPF1
chr1	32373296	32373340	-	3'-UTR,intron-Distal	4.29576	23.99783	K562	UPF1
chr1	32374368	32374390	-	3'-UTR,intron-Distal,intron-Proximal	4.93724	24.80601	K562	LIN28B
chr1	32374454	32374470	-	3'-UTR,CDS,intron-Distal	3.52497	9.07921	K562	YBX3
chr1	32374320	32374392	-	3'-UTR,intron-Distal,intron-Proximal	3.82008	4.63912	HepG2	LIN28B
chr1	32373329	32373342	-	3'-UTR,intron-Distal	5.76295	22.68461	K562	FAM120A
chr1	32381447	32381503	-	CDS,intron-Distal,intron-Proximal	3.20636	4.77826	K562	AQR
chr1	32376287	32376342	-	intron-Distal	3.85199	3.69113	K562	LIN28B
chr1	32375638	32375645	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18085	15.19989	K562	UPF1
chr1	32373873	32373980	-	3'-UTR,intron-Distal	4.76971	400.00000	K562	FAM120A
chr1	32373290	32373329	-	3'-UTR,intron-Distal	4.38009	35.46936	K562	FAM120A
chr1	32374350	32374364	-	3'-UTR,intron-Distal,intron-Proximal	4.15712	44.15719	K562	YBX3
chr1	32372529	32372554	-	3'-UTR,intron-Distal	4.24585	12.96384	K562	IGF2BP1
chr1	32372856	32372900	-	3'-UTR,intron-Distal	3.98679	17.77536	K562	YBX3
chr1	32372356	32372407	-	3'-UTR,intron-Distal	5.85095	78.55985	K562	EIF4G2
chr1	32372273	32372376	-	3'-UTR,intron-Distal	5.87553	400.00000	K562	TARDBP
chr1	32384566	32384571	-	intron-Distal,intron-Proximal	3.27880	6.65588	K562	AQR
chr1	32372446	32372466	-	3'-UTR,intron-Distal	4.04544	3.90287	K562	LIN28B
chr1	32373972	32373982	-	3'-UTR,intron-Distal	3.56395	16.30629	K562	TIA1
chr1	32372801	32372819	-	3'-UTR,intron-Distal	4.90449	32.09107	K562	YBX3
chr1	32373047	32373075	-	3'-UTR,intron-Distal	4.21010	20.07859	K562	FAM120A
chr1	32373906	32373972	-	3'-UTR,intron-Distal	3.82259	73.25839	K562	TIA1
chr1	32373559	32373588	-	3'-UTR,intron-Distal	4.09303	37.48151	K562	FAM120A
chr1	32373286	32373332	-	3'-UTR,intron-Distal	3.25603	6.25289	K562	IGF2BP1
chr1	32372695	32372732	-	3'-UTR,intron-Distal	3.94930	13.89964	K562	YBX3
chr1	32372996	32373030	-	3'-UTR,intron-Distal	3.31659	19.01778	K562	FAM120A
chr1	32371954	32372019	-	intron-Distal,intron-Proximal	4.15661	6.07730	K562	CSTF2T
chr1	32372435	32372528	-	3'-UTR,intron-Distal	4.79029	19.74887	K562	IGF2BP1
chr1	32373654	32373714	-	3'-UTR,intron-Distal,intron-Proximal	4.21147	22.82171	K562	UPF1
chr1	32384526	32384566	-	intron-Distal,intron-Proximal	4.59583	12.86643	K562	AQR
chr1	32374328	32374350	-	3'-UTR,intron-Distal,intron-Proximal	4.61785	60.70351	K562	YBX3
chr1	32373614	32373634	-	3'-UTR,intron-Distal	4.19799	12.91816	K562	UPF1
chr1	32372293	32372358	-	3'-UTR,intron-Distal	3.42158	55.23062	K562	FAM120A
chr1	32374316	32374386	-	3'-UTR,intron-Distal,intron-Proximal	3.59799	5.31125	HepG2	SUB1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-84A19.4 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RP11-84A19.4 is not available on ENCORE database.
10 RBPs can affect the levels of RP11-84A19.4.

The Knockdown/knockout RNA-Seq assay for RP11-84A19.4 is not available on ENCORE database.

10 RBPs can affect the gene expression of RP11-84A19.4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-84A19.4	ENSG00000269967.1	15.37900	0.53160	4.85450	3.90870	3.10170	HepG2	SF3A3
RP11-84A19.4	ENSG00000269967.1	23.85500	5.68320	2.06940	2.72080	2.15640	K562	AGGF1
RP11-84A19.4	ENSG00000269967.1	25.87930	5.91410	2.12950	3.17360	2.47330	K562	AKAP8L
RP11-84A19.4	ENSG00000269967.1	28.22100	5.21630	2.43560	3.43840	2.79870	K562	AQR
RP11-84A19.4	ENSG00000269967.1	1.11980	12.09430	-3.43300	2.43680	1.55160	K562	EIF4G2
RP11-84A19.4	ENSG00000269967.1	29.01760	6.27460	2.20920	3.34510	2.42850	K562	KIF1C
RP11-84A19.4	ENSG00000269967.1	52.49020	5.86160	3.16260	7.51770	6.66880	K562	PUS1
RP11-84A19.4	ENSG00000269967.1	26.18150	5.71420	2.19580	3.24570	2.61180	K562	RBM15
RP11-84A19.4	ENSG00000269967.1	0.00000	8.43220	-99999.99999	2.19730	1.31700	K562	RCC2
RP11-84A19.4	ENSG00000269967.1	28.57140	5.94670	2.26430	3.34770	1.88060	K562	UTP18
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-84A19.4

General Information

Functions

Localization

Domains (AlphaFold: RP11-84A19.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-84A19.4 is not avaliable on ENCORE database.

19 proteins are bound to RP11-84A19.4 RNA:

eCLIP assay for RP11-84A19.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-84A19.4 is not available on ENCORE database.

10 RBPs can affect the gene expression of RP11-84A19.4 :

The Knockdown/knockout RNA-Seq assay for RP11-84A19.4 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RP11-84A19.4 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-84A19.4 is not avaliable on ENCORE database.