RP11-603J24.9

General Information

Gene Name       : RP11-603J24.9
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-603J24.9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-603J24.9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-603J24.9 RNA is bound by 27 proteins.  







eCLIP assay for RP11-603J24.9 is not avaliable on ENCORE database.





27 proteins are bound to RP11-603J24.9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125650092456500979+CDS,intron-Proximal3.873769.96904K562SF3B4
chr125650077756500872+CDS3.300603.80673HepG2GRWD1
chr125650087156500879+CDS3.336915.71803K562UCHL5
chr125650137156501397+CDS3.146524.37610K562IGF2BP1
chr125650097056501001+CDS,intron-Proximal3.040587.04888K562UCHL5
chr125650130456501319+CDS,intron-Proximal3.969153.61890HepG2G3BP1
chr125650305456503077+CDS3.176093.25529K562PUM1
chr125650130456501313+CDS,intron-Proximal3.801195.81804K562BUD13
chr125650037156500379+5'-UTR,CDS,intron-Proximal3.158865.76422K562UCHL5
chr125650301356503020+CDS,intron-Proximal3.219904.61266K562IGF2BP1
chr125650126056501329+CDS,intron-Proximal4.8948928.40851K562SF3B4
chr125650037156500401+5'-UTR,CDS,intron-Proximal4.263413.39686HepG2G3BP1
chr125650298956503055+CDS,intron-Proximal3.417243.51594HepG2AQR
chr125650302056503060+CDS3.015418.34338K562IGF2BP1
chr125650080956500871+CDS3.052529.80995K562UCHL5
chr125650081156500865+CDS3.779424.80070K562GRWD1
chr125650077856500791+CDS3.237427.04888K562UCHL5
chr125650042556500448+5'-UTR,CDS3.395083.46619K562GRWD1
chr125649512956495173+3'-UTR,CDS,intron-Proximal3.526554.54206HepG2PRPF8
chr125650079456500850+CDS3.933175.01703K562PUM1
chr125650092156500989+CDS,intron-Proximal3.4880417.45821K562EFTUD2
chr125649587756495939+3'-UTR,intron-Distal4.4593739.75392HepG2PCBP2
chr125649527056495345+3'-UTR,CDS,intron-Distal,intron-Proximal3.381333.90373HepG2AQR
chr125649590456495974+3'-UTR,intron-Distal4.2080231.02453HepG2HNRNPK
chr125649589356495956+3'-UTR,intron-Distal3.897428.54875HepG2G3BP1
chr125649846456498587+5'-UTR,CDS,intron-Distal3.791458.35533K562ZNF800
chr125649839156498497+5'-UTR,intron-Distal3.8350935.65201K562DDX3X
chr125649859256498656+CDS,intron-Distal,intron-Proximal4.167506.95612HepG2PRPF8
chr125649593956495986+3'-UTR,intron-Distal4.9223744.67405HepG2PCBP2
chr125649644556496465+3'-UTR,intron-Distal3.1988322.67180HepG2HNRNPL
chr125649724356497263+3'-UTR,intron-Distal6.3372912.74445HepG2FUBP3
chr125649866456498710+5'-UTR,intron-Distal,intron-Proximal4.420584.89018K562EFTUD2
chr125649845556498540+5'-UTR,CDS,intron-Distal3.437654.58860K562XRCC6
chr125649849256498562+5'-UTR,CDS,intron-Distal4.010536.59266K562DROSHA
chr125649560256495699+3'-UTR,CDS,intron-Distal3.402254.54435HepG2ZNF800
chr125649848456498581+5'-UTR,CDS,intron-Distal4.7532025.99085K562UCHL5
chr125649726356497288+3'-UTR,intron-Distal,polyA_site5.2135310.24889HepG2FUBP3
chr125649609256496149+3'-UTR,intron-Distal4.529346.08927HepG2IGF2BP3
chr125649843756498574+5'-UTR,CDS,intron-Distal4.019039.60693HepG2G3BP1
chr125649858156498610+CDS,intron-Distal,intron-Proximal4.0777011.85892K562UCHL5
chr125649707756497130+3'-UTR,intron-Distal5.2070219.40744HepG2IGF2BP1
chr125649703256497111+3'-UTR,intron-Distal4.6339814.60853HepG2IGF2BP3
chr125649841956498510+5'-UTR,intron-Distal3.183799.27016K562FXR2
chr125649835256498416+5'-UTR,intron-Distal3.327537.33658K562FMR1
chr125649841656498466+5'-UTR,intron-Distal3.585796.81630K562FMR1
chr125649642156496445+3'-UTR,intron-Distal3.4229414.80601HepG2HNRNPL
chr125649703056497052+3'-UTR,intron-Distal4.681325.14669HepG2IGF2BP1
chr125649672456496767+3'-UTR,intron-Distal3.433054.51483HepG2PABPN1
chr125649660856496659+3'-UTR,intron-Distal3.009055.03836HepG2PABPN1
chr125649635256496421+3'-UTR,intron-Distal3.3397820.73547HepG2HNRNPL
chr125649851056498568+5'-UTR,CDS,intron-Distal5.241599.23363K562FXR2
chr125649559056495682+3'-UTR,CDS,intron-Distal3.2908712.97277HepG2LIN28B
chr125649568656495740+3'-UTR,CDS,intron-Distal4.153766.24124HepG2G3BP1
chr125649858256498607+CDS,intron-Distal4.042743.11282HepG2G3BP1
chr125649857256498611+CDS,intron-Distal,intron-Proximal3.187576.40796K562GRWD1
chr125649645756496507+3'-UTR,intron-Distal4.4828126.69702HepG2IGF2BP1
chr125649588756495965+3'-UTR,intron-Distal3.034637.38382HepG2PCBP1
chr125650112856501229+intron-Distal,intron-Proximal3.433435.35459K562KHSRP
chr125649705256497077+3'-UTR,intron-Distal5.0155715.49852HepG2IGF2BP1
chr125649560356495686+3'-UTR,CDS,intron-Distal3.714607.40596HepG2G3BP1
chr125649837056498494+5'-UTR,intron-Distal3.5362628.13821K562GEMIN5
chr125649849456498552+5'-UTR,CDS,intron-Distal3.7732214.11050K562GEMIN5
chr125649857956498610+CDS,intron-Distal,intron-Proximal3.184575.01765K562GEMIN5
chr125649851256498557+5'-UTR,CDS,intron-Distal4.831726.31252K562FMR1
chr125650106056501148+intron-Distal,intron-Proximal4.4798012.61143K562EFTUD2
chr125649864056498806+5'-UTR,intron-Distal,intron-Proximal5.2499418.74293HepG2EFTUD2
chr125649645656496509+3'-UTR,intron-Distal4.2133015.96529HepG2IGF2BP3
chr125649865656498705+5'-UTR,intron-Distal,intron-Proximal3.745665.28701K562PRPF8
chr125649850456498572+5'-UTR,CDS,intron-Distal3.069933.93498HepG2GRWD1
chr125650106456501120+intron-Proximal4.307058.41305K562TIA1
chr125650104556501120+intron-Proximal5.8377710.09256HepG2PRPF8
chr125650139956501452+intron-Proximal4.284596.39176K562AQR
chr125650104756501102+intron-Proximal4.204629.03062K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-603J24.9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-603J24.9 is not available on ENCORE database.

  • 9 RBPs can affect the levels of RP11-603J24.9.  








The Knockdown/knockout RNA-Seq assay for RP11-603J24.9 is not available on ENCORE database.





9 RBPs can affect the gene expression of RP11-603J24.9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-603J24.9ENSG00000257411.10.000009.07260-99999.999992.844401.49980HepG2ILF3
RP11-603J24.9ENSG00000257411.10.000008.86800-99999.999992.895201.67090HepG2KHDRBS1
RP11-603J24.9ENSG00000257411.10.000008.50600-99999.999992.591001.73910HepG2PABPC1
RP11-603J24.9ENSG00000257411.10.000008.98840-99999.999992.878201.30760HepG2RBM47
RP11-603J24.9ENSG00000257411.10.000009.34530-99999.999993.007502.17450HepG2RPS3A
RP11-603J24.9ENSG00000257411.10.000008.80020-99999.999992.785101.47120HepG2SART3
RP11-603J24.9ENSG00000257411.10.000008.12960-99999.999992.734101.64020HepG2STIP1
RP11-603J24.9ENSG00000257411.10.000008.37060-99999.999992.761901.66700HepG2XPO5
RP11-603J24.9ENSG00000257411.130.089700.0000099999.999907.782806.51920K562PRPF8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-603J24.9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-603J24.9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-603J24.9 is not avaliable on ENCORE database.