RP11-574K11.28

General Information

Gene Name : RP11-574K11.28
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-574K11.28)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-574K11.28 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-574K11.28 RNA is bound by 14 proteins.

eCLIP assay for RP11-574K11.28 is not avaliable on ENCORE database.

14 proteins are bound to RP11-574K11.28 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	75487118	75487220	-	intron-Distal	5.13011	7.39496	HepG2	BCLAF1
chr10	75490119	75490219	-	intron-Distal	3.81112	5.29681	HepG2	NCBP2
chr10	75478928	75478966	-	intron-Distal,intron-Proximal	3.49859	3.27569	HepG2	BCLAF1
chr10	75464707	75464797	-	intron-Distal,intron-Proximal	3.54298	3.54718	K562	PRPF8
chr10	75478600	75478623	-	intron-Distal	3.83324	3.60940	HepG2	HNRNPC
chr10	75478988	75479058	-	intron-Distal,intron-Proximal	3.88516	7.71102	K562	ZNF622
chr10	75475892	75475967	-	intron-Distal	4.77680	14.19929	HepG2	U2AF2
chr10	75490171	75490217	-	intron-Distal	3.44217	3.90826	K562	ZNF622
chr10	75480335	75480418	-	intron-Distal,intron-Proximal	3.90638	7.65975	HepG2	BCLAF1
chr10	75475896	75475959	-	intron-Distal	4.72336	5.29744	K562	U2AF2
chr10	75478970	75479059	-	intron-Distal,intron-Proximal	4.14495	4.28220	HepG2	GRWD1
chr10	75475969	75476001	-	intron-Distal	3.53409	8.13921	K562	KHSRP
chr10	75475896	75475942	-	intron-Distal	3.80820	3.76069	K562	U2AF1
chr10	75475891	75475944	-	intron-Distal	3.81942	3.66257	HepG2	U2AF1
chr10	75476942	75477011	-	intron-Distal	4.66836	12.79832	K562	KHSRP
chr10	75476272	75476321	-	intron-Distal	4.11345	3.75546	HepG2	KHSRP
chr10	75481213	75481261	-	intron-Distal	3.62815	3.95301	K562	ZNF622
chr10	75476932	75476970	-	intron-Distal	4.24286	3.79000	HepG2	U2AF2
chr10	75476074	75476133	-	intron-Distal	5.01003	4.82195	HepG2	XPO5
chr10	75480294	75480322	-	intron-Distal,intron-Proximal	3.25864	3.34848	HepG2	PPIG
chr10	75487162	75487230	-	intron-Distal	4.78418	5.78736	K562	ZNF622
chr10	75477427	75477485	-	intron-Distal	4.04037	6.44495	HepG2	U2AF2
chr10	75475963	75476021	-	intron-Distal	3.23068	3.81210	HepG2	KHSRP
chr10	75484422	75484567	-	intron-Distal	3.20977	3.06355	HepG2	KHSRP
chr10	75476001	75476033	-	intron-Distal	3.90381	10.23826	K562	KHSRP
chr10	75481118	75481162	-	intron-Distal,intron-Proximal	3.52688	3.87469	HepG2	BCLAF1
chr10	75481122	75481175	-	intron-Distal	3.92810	3.01428	K562	UCHL5
chr10	75477011	75477037	-	intron-Distal	4.36859	10.17772	K562	KHSRP
chr10	75483430	75483552	-	intron-Distal	3.85960	9.44690	K562	TARDBP
chr10	75477634	75477700	-	intron-Distal,intron-Proximal	3.20314	4.21588	K562	PRPF8
chr10	75484338	75484467	-	intron-Distal	4.39487	9.06934	K562	KHSRP
chr10	75478045	75478100	-	intron-Distal	3.72757	4.77518	HepG2	U2AF2
chr10	75480295	75480335	-	intron-Distal,intron-Proximal	3.44192	5.15500	HepG2	BCLAF1
chr10	75476033	75476060	-	intron-Distal	3.26672	4.81136	K562	KHSRP
chr10	75481207	75481258	-	intron-Distal	4.17689	3.79199	HepG2	PPIG
chr10	75476266	75476333	-	intron-Distal	4.83198	7.52645	K562	TARDBP
chr10	75484467	75484543	-	intron-Distal	4.85056	7.01496	K562	KHSRP
chr10	75483969	75484024	-	intron-Distal	3.28266	3.76090	HepG2	U2AF2
chr10	75480295	75480409	-	intron-Distal,intron-Proximal	3.21147	9.10317	K562	ZNF622
chr10	75464714	75464791	-	intron-Distal,intron-Proximal	4.72744	5.34978	HepG2	PRPF8
chr10	75481209	75481263	-	intron-Distal,intron-Proximal	4.81936	5.23259	HepG2	BCLAF1
chr10	75488216	75488290	-	intron-Distal	3.74130	4.93978	HepG2	BCLAF1
chr10	75475513	75475579	-	intron-Distal,intron-Proximal	4.51494	5.18111	K562	CSTF2T
chr10	75488229	75488319	-	intron-Distal	4.20538	11.72700	K562	ZNF622
chr10	75478623	75478649	-	intron-Distal	3.75124	3.15106	HepG2	HNRNPC
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-574K11.28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-574K11.28 is not available on ENCORE database.
22 RBPs can affect the levels of RP11-574K11.28.

The Knockdown/knockout RNA-Seq assay for RP11-574K11.28 is not available on ENCORE database.

22 RBPs can affect the gene expression of RP11-574K11.28 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-574K11.28	ENSG00000271816.1	69.52040	19.36210	1.84410	5.29750	4.41280	HepG2	EIF4A3
RP11-574K11.28	ENSG00000271816.1	48.72370	18.86560	1.36880	2.26960	1.64280	HepG2	EIF4B
RP11-574K11.28	ENSG00000271816.1	41.61660	18.13090	1.19860	2.00060	1.43140	HepG2	G3BP1
RP11-574K11.28	ENSG00000271816.1	80.29690	18.38630	2.12660	6.89300	5.82850	HepG2	HNRNPK
RP11-574K11.28	ENSG00000271816.1	12.06480	30.20730	-1.32410	2.05150	1.52000	HepG2	HNRNPU
RP11-574K11.28	ENSG00000271816.1	47.43080	18.42550	1.36400	2.50590	1.85980	HepG2	IGF2BP2
RP11-574K11.28	ENSG00000271816.1	51.04930	18.54070	1.46110	2.79480	1.78790	HepG2	KHSRP
RP11-574K11.28	ENSG00000271816.1	54.38460	19.56450	1.47490	2.66760	2.02340	HepG2	MAGOH
RP11-574K11.28	ENSG00000271816.1	57.55990	19.41930	1.56750	4.40570	3.66970	HepG2	PCBP1
RP11-574K11.28	ENSG00000271816.1	38.01860	17.47430	1.12140	2.10720	1.61220	HepG2	SRSF9
RP11-574K11.28	ENSG00000271816.1	75.31220	19.31650	1.96300	7.29700	6.46150	HepG2	TAF15
RP11-574K11.28	ENSG00000271816.1	46.83150	17.73250	1.40100	2.48140	1.68700	HepG2	TIA1
RP11-574K11.28	ENSG00000271816.1	59.19810	123.17840	-1.05710	3.67730	3.04020	K562	AGGF1
RP11-574K11.28	ENSG00000271816.1	245.93870	160.03640	0.61980	2.34200	1.44520	K562	CELF1
RP11-574K11.28	ENSG00000271816.1	75.74200	137.91130	-0.86460	3.51080	2.50700	K562	DKC1
RP11-574K11.28	ENSG00000271816.1	117.83820	63.93340	0.88210	3.04920	2.18890	K562	EIF4A3
RP11-574K11.28	ENSG00000271816.1	143.53300	84.72230	0.76050	2.49130	1.32500	K562	HNRNPK
RP11-574K11.28	ENSG00000271816.1	33.64220	103.21410	-1.61730	4.83610	3.64490	K562	HNRNPU
RP11-574K11.28	ENSG00000271816.1	83.61830	136.01780	-0.70190	2.06130	1.35940	K562	KIF1C
RP11-574K11.28	ENSG00000271816.1	77.91120	152.37540	-0.96770	4.29390	3.11650	K562	MBNL1
RP11-574K11.28	ENSG00000271816.1	57.44570	106.80480	-0.89470	2.26520	1.48680	K562	NAA15
RP11-574K11.28	ENSG00000271816.1	139.18900	90.21260	0.62550	2.16570	1.49740	K562	NSUN2
RP11-574K11.28	ENSG00000271816.1	52.10890	86.61230	-0.73300	2.07320	1.48280	K562	PTBP1
RP11-574K11.28	ENSG00000271816.1	55.55760	127.09830	-1.19390	4.85890	4.16530	K562	PUS1
RP11-574K11.28	ENSG00000271816.1	50.49050	123.85150	-1.29450	5.46710	4.65840	K562	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-574K11.28 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-574K11.28 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-574K11.28	ENSG00000271816.1	chr10	-	75484532	75484596	75482146	75482335	75485718	75485798	-0.23900	0.00184	0.02046	excluded	K562	AQR
SE	RP11-574K11.28	ENSG00000271816.1	chr10	-	75484532	75484596	75482146	75482335	75485718	75485798	0.32200	0.00110	0.04321	included	K562	PTBP1
A3SS	RP11-574K11.28	ENSG00000271816.1	chr10	-	75478917	75479103	75478917	75479057	75480295	75480417	0.26700	0.00000	0.00001	longer	K562	AQR
A5SS	RP11-574K11.28	ENSG00000271816.1	chr10	-	75480175	75480417	75480295	75480417	75478917	75479057	0.11500	0.00031	0.00698	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-574K11.28

General Information

Functions

Localization

Domains (AlphaFold: RP11-574K11.28)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-574K11.28 is not avaliable on ENCORE database.

14 proteins are bound to RP11-574K11.28 RNA:

eCLIP assay for RP11-574K11.28 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-574K11.28 is not available on ENCORE database.

22 RBPs can affect the gene expression of RP11-574K11.28 :

The Knockdown/knockout RNA-Seq assay for RP11-574K11.28 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-574K11.28 :

The Knockdown/knockout RNA-Seq assay for RP11-574K11.28 is not avaliable on ENCORE database.