RP11-227G15.3

General Information

Gene Name       : RP11-227G15.3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-227G15.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-227G15.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-227G15.3 RNA is bound by 15 proteins.  







eCLIP assay for RP11-227G15.3 is not avaliable on ENCORE database.





15 proteins are bound to RP11-227G15.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173068483530684897+intron-Distal3.400497.11373HepG2HNRNPC
chr173067739230677421+intron-Distal,intron-Proximal3.729413.14999K562EXOSC5
chr173067858430678630+5'-UTR,intron-Distal4.441185.16513HepG2HNRNPM
chr173067732630677346+5'-UTR,CDS,intron-Distal,intron-Proximal3.8565522.18360K562ZNF622
chr173068070530680761+intron-Distal4.310134.06667K562GTF2F1
chr173067718630677220+5'-UTR,intron-Distal,intron-Proximal4.1753518.89904K562DDX3X
chr173067858530678629+5'-UTR,intron-Distal3.650194.57394K562HNRNPM
chr173068069430680764+intron-Distal4.034403.70701HepG2PRPF4
chr173067737430677443+intron-Distal,intron-Proximal3.6960210.00949K562HNRNPM
chr173067838130678480+intron-Distal,intron-Proximal5.305507.69142K562KHSRP
chr173067780530677834+intron-Distal4.346054.48560K562EXOSC5
chr173067723930677254+5'-UTR,intron-Distal,intron-Proximal3.1956522.54318K562ZNF622
chr173067744330677509+intron-Distal,intron-Proximal3.8279011.07074K562HNRNPM
chr173067750930677572+intron-Distal4.1982010.24677K562HNRNPM
chr173067787030677917+intron-Distal3.275977.92147K562EXOSC5
chr173067744830677509+intron-Distal,intron-Proximal3.894107.39230HepG2HNRNPM
chr173067757830677644+intron-Distal3.748828.92112HepG2HNRNPM
chr173067735430677394+5'-UTR,intron-Distal,intron-Proximal3.110696.13643K562AQR
chr173067751030677578+intron-Distal3.530847.46034HepG2HNRNPM
chr173067725430677293+5'-UTR,intron-Distal,intron-Proximal3.3982857.45258K562ZNF622
chr173067744630677522+intron-Distal,intron-Proximal4.6468410.61559K562EXOSC5
chr173067758530677642+intron-Distal4.0139210.35553K562HNRNPM
chr173067729330677326+5'-UTR,CDS,intron-Distal,intron-Proximal3.6302455.31067K562ZNF622
chr173067733530677339+5'-UTR,CDS,intron-Distal4.848788.41344HepG2GRWD1
chr173068552030685552+CDS,intron-Distal,intron-Proximal3.244135.74981HepG2GRWD1
chr173067887930678932+5'-UTR,CDS,intron-Proximal3.6632515.75080K562DDX24
chr173067877030678801+5'-UTR,CDS,intron-Proximal3.861684.69223K562SF3B4
chr173068552030685578+CDS,intron-Distal,intron-Proximal4.6240719.21290HepG2BCLAF1
chr173067893530678965+intron-Proximal4.831155.65342K562AQR
chr173067894230678984+intron-Proximal4.275117.80986K562PRPF8
chr173067880330678808+5'-UTR,CDS,intron-Proximal3.670189.75908K562ZNF622
chr173068563330685661+CDS,intron-Distal,intron-Proximal4.192769.98400HepG2BCLAF1
chr173067880330678817+5'-UTR,CDS,intron-Proximal3.8742011.72200K562UCHL5
chr173067880330678884+5'-UTR,CDS,intron-Proximal3.8432113.64933HepG2GRWD1
chr173067877030678871+5'-UTR,CDS,intron-Proximal3.507524.40430HepG2AQR
chr173067880330678814+5'-UTR,CDS,intron-Proximal3.351916.86395HepG2BCLAF1
chr173068761630687625+CDS,intron-Distal,intron-Proximal3.508145.76104HepG2BCLAF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-227G15.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-227G15.3 is not available on ENCORE database.

  • 10 RBPs can affect the levels of RP11-227G15.3.  








The Knockdown/knockout RNA-Seq assay for RP11-227G15.3 is not available on ENCORE database.





10 RBPs can affect the gene expression of RP11-227G15.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-227G15.3ENSG00000265794.10.4237021.50540-5.665604.259401.39720HepG2HNRNPUL1
RP11-227G15.3ENSG00000265794.10.0000024.82420-99999.999995.932802.65150HepG2NPM1
RP11-227G15.3ENSG00000265794.10.0000023.43340-99999.999996.082803.25150HepG2NUFIP2
RP11-227G15.3ENSG00000265794.10.0000022.21670-99999.999995.305301.99590HepG2RBFOX2
RP11-227G15.3ENSG00000265794.10.0000023.58620-99999.999995.856703.09810HepG2RBM17
RP11-227G15.3ENSG00000265794.10.0000020.73480-99999.999994.971402.66090HepG2RBM39
RP11-227G15.3ENSG00000265794.10.0000022.80870-99999.999995.796303.70230HepG2SF1
RP11-227G15.3ENSG00000265794.11.6918022.10560-3.707803.274601.67820HepG2SFPQ
RP11-227G15.3ENSG00000265794.10.0000020.35330-99999.999995.347503.37160HepG2SNRNP200
RP11-227G15.3ENSG00000265794.10.0000023.71670-99999.999995.663404.20530HepG2U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-227G15.3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-227G15.3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-227G15.3 is not avaliable on ENCORE database.