RP1-29C18.8

General Information

Gene Name : RP1-29C18.8
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP1-29C18.8)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP1-29C18.8 is not avaliable on ENCORE database.

Proteins bound to RNA

RP1-29C18.8 RNA is bound by 22 proteins.

eCLIP assay for RP1-29C18.8 is not avaliable on ENCORE database.

22 proteins are bound to RP1-29C18.8 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	50006440	50006522	-	intron-Distal	3.81904	13.14008	K562	HNRNPL
chr22	50009044	50009100	-	intron-Distal	3.59735	7.90325	K562	TIA1
chr22	50007772	50007825	-	intron-Distal	4.19387	8.67848	K562	CSTF2T
chr22	50006825	50006904	-	intron-Distal	3.19869	10.38895	K562	DDX52
chr22	50006834	50006922	-	intron-Distal	3.64890	8.47068	K562	FUS
chr22	50006825	50006899	-	intron-Distal	4.05610	3.91527	K562	PPIL4
chr22	50006817	50006843	-	intron-Distal	4.03085	11.61227	K562	HNRNPL
chr22	50007769	50007835	-	intron-Distal	3.06742	4.35067	K562	GTF2F1
chr22	50008538	50008572	-	intron-Distal	3.00956	4.80096	K562	TIA1
chr22	50008866	50008944	-	intron-Distal	4.37068	13.96281	K562	NONO
chr22	50006823	50006968	-	intron-Distal	6.72458	400.00000	K562	AGGF1
chr22	50007767	50007823	-	intron-Distal	3.45241	7.55112	K562	EWSR1
chr22	50007790	50007822	-	intron-Distal	4.65684	17.16747	K562	AGGF1
chr22	50009153	50009248	-	intron-Distal	4.41990	16.53867	K562	EWSR1
chr22	50006825	50006900	-	intron-Distal	3.71300	5.50756	K562	DDX6
chr22	50008837	50008937	-	intron-Distal	4.46401	19.34837	K562	EWSR1
chr22	50007789	50007831	-	intron-Distal	5.11694	8.49954	K562	DDX52
chr22	50007784	50007829	-	intron-Distal	4.85979	10.68274	K562	DHX30
chr22	50008871	50008943	-	intron-Distal	5.25258	9.95168	K562	FUS
chr22	50009052	50009087	-	intron-Distal	5.34666	6.22530	K562	DDX52
chr22	50007894	50007934	-	intron-Distal	3.41531	3.93052	K562	DHX30
chr22	50007559	50007614	-	intron-Distal	3.14560	6.69927	K562	HNRNPL
chr22	50009428	50009475	-	intron-Distal,intron-Proximal	3.37303	6.95837	K562	TIA1
chr22	50009363	50009403	-	intron-Distal,intron-Proximal	3.41798	3.86342	K562	SMNDC1
chr22	50008964	50009028	-	intron-Distal	4.44832	9.83092	K562	NONO
chr22	50009373	50009400	-	intron-Distal,intron-Proximal	3.19957	7.02766	K562	NONO
chr22	50008979	50009063	-	intron-Distal	3.74394	5.78686	K562	SLTM
chr22	50009189	50009236	-	intron-Distal	4.58125	19.81555	K562	AGGF1
chr22	50009274	50009348	-	intron-Distal	5.96289	14.94453	K562	NONO
chr22	50009191	50009249	-	intron-Distal	3.97446	3.03355	K562	METAP2
chr22	50006800	50006915	-	intron-Distal	3.86364	11.43347	K562	CSTF2T
chr22	50009121	50009153	-	intron-Distal	3.88100	8.02566	K562	EWSR1
chr22	50009148	50009237	-	intron-Distal	5.01440	25.68582	K562	NONO
chr22	50008039	50008075	-	intron-Distal	3.28614	3.54602	K562	TIA1
chr22	50006820	50006920	-	intron-Distal	3.58102	8.76281	K562	FTO
chr22	50006811	50006918	-	intron-Distal	3.97061	20.93085	K562	GTF2F1
chr22	50007980	50008031	-	intron-Distal	3.57881	7.34646	K562	NONO
chr22	50008797	50008813	-	intron-Distal	3.37793	4.34865	K562	NONO
chr22	50009248	50009338	-	intron-Distal	5.05606	12.28194	K562	EWSR1
chr22	50007843	50007874	-	intron-Distal	3.40779	4.58795	K562	EWSR1
chr22	50009102	50009151	-	intron-Distal	4.27243	8.55904	K562	DHX30
chr22	50006823	50006927	-	intron-Distal	3.24969	7.17019	K562	SLTM
chr22	50008812	50008871	-	intron-Distal	3.83340	6.02879	K562	FUS
chr22	50009229	50009277	-	intron-Distal	4.68719	5.31171	K562	HNRNPM
chr22	50008668	50008734	-	intron-Distal	5.60716	12.23359	K562	EWSR1
chr22	50009143	50009230	-	intron-Distal	3.60992	14.49298	K562	TIA1
chr22	50008668	50008735	-	intron-Distal	3.47055	6.14207	K562	DROSHA
chr22	50009170	50009232	-	intron-Distal	4.72509	6.72131	K562	FUS
chr22	50007859	50007998	-	intron-Distal	3.41331	10.12558	K562	FUS
chr22	50009277	50009335	-	intron-Distal	4.89903	6.61547	K562	HNRNPM
chr22	50006827	50006924	-	intron-Distal	4.40256	29.85462	K562	AKAP8L
chr22	50009285	50009333	-	intron-Distal	3.94927	3.78929	K562	NOLC1
chr22	50007849	50007892	-	intron-Distal	3.46209	4.71513	K562	NONO
chr22	50009217	50009235	-	intron-Distal	5.33564	5.60708	K562	DDX52
chr22	50008707	50008780	-	intron-Distal	3.95826	6.02879	K562	FUS
chr22	50009374	50009428	-	intron-Distal,intron-Proximal	3.72635	8.80445	K562	TIA1
chr22	50009286	50009332	-	intron-Distal	4.70268	3.75568	K562	SLTM
chr22	50007856	50007874	-	intron-Distal	4.21514	4.96672	K562	DDX52
chr22	50007778	50007864	-	intron-Distal	3.22452	3.95117	K562	SAFB
chr22	50006778	50006817	-	intron-Distal	5.61233	12.06781	K562	HNRNPL
chr22	50007040	50007079	-	intron-Distal	4.53235	6.55010	K562	HNRNPL
chr22	50009032	50009121	-	intron-Distal	3.85990	11.54450	K562	EWSR1
chr22	50007897	50007952	-	intron-Distal	4.90624	22.93093	K562	AGGF1
chr22	50009100	50009136	-	intron-Distal	5.08947	7.01471	K562	TIA1
chr22	50007710	50007765	-	intron-Distal	4.00177	8.00296	K562	HNRNPL
chr22	50007445	50007489	-	intron-Distal	3.12721	3.54015	K562	HNRNPUL1
chr22	50008899	50008941	-	intron-Distal	4.86063	9.21967	K562	AGGF1
chr22	50009236	50009277	-	intron-Distal	3.46985	3.12654	K562	SLTM
chr22	50006780	50006811	-	intron-Distal	4.38063	4.46189	K562	GTF2F1
chr22	50006903	50006954	-	intron-Distal	6.19111	23.11576	K562	HNRNPL
chr22	50009283	50009333	-	intron-Distal	3.96683	5.81451	K562	CSTF2T
chr22	50009175	50009212	-	intron-Distal	3.14699	6.92561	K562	CSTF2T
chr22	50006843	50006873	-	intron-Distal	4.72377	25.12911	K562	HNRNPL
chr22	50008955	50009017	-	intron-Distal	4.61249	10.82620	K562	EWSR1
chr22	50009045	50009103	-	intron-Distal	3.75484	12.00402	K562	NONO
chr22	50007850	50007896	-	intron-Distal	3.48245	5.67615	K562	GTF2F1
chr22	50007768	50007859	-	intron-Distal	4.26882	10.33697	K562	FUS
chr22	50009366	50009442	-	intron-Distal,intron-Proximal	5.13841	7.88580	K562	HNRNPM
chr22	50006844	50006916	-	intron-Distal	4.14386	11.87948	K562	EWSR1
chr22	50009103	50009148	-	intron-Distal	4.13874	11.11767	K562	NONO
chr22	50006873	50006903	-	intron-Distal	5.31858	44.56945	K562	HNRNPL
chr22	50006536	50006578	-	intron-Distal	3.42912	6.87839	K562	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP1-29C18.8 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RP1-29C18.8 is not available on ENCORE database.
9 RBPs can affect the levels of RP1-29C18.8.

The Knockdown/knockout RNA-Seq assay for RP1-29C18.8 is not available on ENCORE database.

9 RBPs can affect the gene expression of RP1-29C18.8 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP1-29C18.8	ENSG00000235111.1	47.50400	14.65480	1.69660	3.40240	2.76570	K562	AQR
RP1-29C18.8	ENSG00000235111.1	12.26960	34.62340	-1.49670	2.72430	1.54430	K562	IGF2BP3
RP1-29C18.8	ENSG00000235111.1	80.76360	31.85500	1.34210	4.11880	2.91930	K562	PCBP2
RP1-29C18.8	ENSG00000235111.1	70.88810	33.36350	1.08720	3.06750	2.17770	K562	RBM22
RP1-29C18.8	ENSG00000235111.1	84.06450	32.50860	1.37060	2.94740	1.50480	K562	RBM34
RP1-29C18.8	ENSG00000235111.1	37.08910	12.08940	1.61710	2.62300	1.37000	K562	SFPQ
RP1-29C18.8	ENSG00000235111.1	8.97470	34.50630	-1.94290	3.54020	2.73650	K562	TARDBP
RP1-29C18.8	ENSG00000235111.1	87.63710	28.30150	1.63060	6.54890	5.31940	K562	U2AF2
RP1-29C18.8	ENSG00000235111.1	46.01290	16.50430	1.47910	3.26050	2.31450	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP1-29C18.8

General Information

Functions

Localization

Domains (AlphaFold: RP1-29C18.8)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP1-29C18.8 is not avaliable on ENCORE database.

22 proteins are bound to RP1-29C18.8 RNA:

eCLIP assay for RP1-29C18.8 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP1-29C18.8 is not available on ENCORE database.

9 RBPs can affect the gene expression of RP1-29C18.8 :

The Knockdown/knockout RNA-Seq assay for RP1-29C18.8 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RP1-29C18.8 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP1-29C18.8 is not avaliable on ENCORE database.