LRFN1

General Information

Gene Name       : LRFN1
Gene ID             : ENSG00000128011.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LRFN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LRFN1ENSG00000128011.40.020.070.05ENCSR000AEF
HepG2LRFN1ENSG00000128011.40.650.240.45ENCSR985KAT
K562LRFN1ENSG00000128011.41.500.891.20ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LRFN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LRFN1 RNA is bound by 2 proteins.  







eCLIP assay for LRFN1 is not avaliable on ENCORE database.





2 proteins are bound to LRFN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr193979732639797386-3'-UTR,intron-Distal4.717006.26655K562EIF4G2
chr193980495039805024-CDS,intron-Distal4.105413.73331K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LRFN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LRFN1 is not available on ENCORE database.

  • 28 RBPs can affect the levels of LRFN1.  








The Knockdown/knockout RNA-Seq assay for LRFN1 is not available on ENCORE database.





28 RBPs can affect the gene expression of LRFN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LRFN1ENSG00000128011.478.6478010.574502.894708.035307.00710HepG2MATR3
LRFN1ENSG00000128011.434.1391010.374801.718202.900602.21520HepG2PUM2
LRFN1ENSG00000128011.428.934206.600002.132102.899102.34780HepG2NELFE
LRFN1ENSG00000128011.424.840306.146702.014702.465801.87980HepG2RECQL
LRFN1ENSG00000128011.41.5017022.35000-3.895604.436003.84510HepG2SRFBP1
LRFN1ENSG00000128011.4266.74020132.457701.009807.874106.98620K562AGGF1
LRFN1ENSG00000128011.4260.98980137.830000.921006.174605.17170K562AKAP8L
LRFN1ENSG00000128011.4263.34950144.620100.864603.897002.79680K562ATP5C1
LRFN1ENSG00000128011.494.6317054.112500.806302.283101.41230K562BCLAF1
LRFN1ENSG00000128011.4133.13970200.18790-0.588402.212601.43900K562BOP1
LRFN1ENSG00000128011.4178.6539084.437501.081103.843902.55820K562CCAR1
LRFN1ENSG00000128011.4183.2719094.543500.954803.576502.03410K562DHX30
LRFN1ENSG00000128011.485.1301034.517501.302203.837602.55200K562IGF2BP2
LRFN1ENSG00000128011.466.4684036.231000.875302.145501.40140K562MAGOH
LRFN1ENSG00000128011.4322.87220198.908400.698803.828902.14960K562PNPT1
LRFN1ENSG00000128011.472.9455035.204101.051003.059702.36530K562PTBP1
LRFN1ENSG00000128011.4175.6436090.105400.962904.008501.65590K562RBFOX2
LRFN1ENSG00000128011.4211.39140133.181500.666403.360202.71670K562RBM15
LRFN1ENSG00000128011.4208.75810279.24220-0.419702.061101.34960K562SF3A3
LRFN1ENSG00000128011.4117.1706070.992600.722802.201001.30670K562SRFBP1
LRFN1ENSG00000128011.4180.00730286.09360-0.668404.437003.28240K562SRPK2
LRFN1ENSG00000128011.4130.7255056.974501.198104.556103.14770K562SRSF4
LRFN1ENSG00000128011.463.9167032.611200.970702.353301.39730K562SRSF5
LRFN1ENSG00000128011.4121.82150200.10710-0.716003.059401.73380K562STAU1
LRFN1ENSG00000128011.483.8396034.922301.263402.886902.16480K562TARDBP
LRFN1ENSG00000128011.474.7196033.689401.149103.259802.36120K562TIA1
LRFN1ENSG00000128011.4135.1320083.872900.688002.400901.52910K562TRIM56
LRFN1ENSG00000128011.4123.78350199.84260-0.691002.619301.45270K562UTP3
LRFN1ENSG00000128011.4107.0142048.764601.133803.767502.27880K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LRFN1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of LRFN1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for LRFN1 is not avaliable on ENCORE database.