CTD-2616J11.11

General Information

Gene Name : CTD-2616J11.11
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTD-2616J11.11)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTD-2616J11.11 is not avaliable on ENCORE database.

Proteins bound to RNA

CTD-2616J11.11 RNA is bound by 33 proteins.

eCLIP assay for CTD-2616J11.11 is not avaliable on ENCORE database.

33 proteins are bound to CTD-2616J11.11 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	51857396	51857533	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.17755	8.84203	HepG2	WDR43
chr19	51856503	51856533	-	3'-UTR,CDS,intron-Distal	3.82175	11.70999	HepG2	DDX3X
chr19	51857506	51857559	-	3'-UTR,CDS,intron-Distal	4.73464	4.79919	K562	GEMIN5
chr19	51857474	51857553	-	3'-UTR,CDS,intron-Distal	3.60493	18.64795	K562	DDX3X
chr19	51853625	51853685	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.69657	6.34662	HepG2	PRPF8
chr19	51856417	51856452	-	3'-UTR,CDS,intron-Distal	4.48399	57.38904	HepG2	RPS3
chr19	51856468	51856526	-	3'-UTR,CDS,intron-Distal	5.23324	9.53134	K562	RPS3
chr19	51857433	51857438	-	3'-UTR,CDS,intron-Distal	4.63031	28.60611	K562	YBX3
chr19	51853501	51853658	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54272	6.88667	K562	BUD13
chr19	51856385	51856471	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.45320	23.47850	HepG2	DDX3X
chr19	51857355	51857407	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.51222	9.83200	HepG2	AQR
chr19	51857425	51857433	-	3'-UTR,CDS,intron-Distal	4.46724	29.60126	K562	YBX3
chr19	51857402	51857455	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59557	40.55511	HepG2	GRWD1
chr19	51856376	51856462	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18235	4.86978	HepG2	WDR43
chr19	51857454	51857515	-	3'-UTR,CDS,intron-Distal	3.26984	17.72591	HepG2	RPS3
chr19	51853637	51853646	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84212	17.82449	HepG2	G3BP1
chr19	51857423	51857441	-	3'-UTR,CDS,intron-Distal	3.86922	14.32620	HepG2	UCHL5
chr19	51857401	51857515	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32726	11.96981	K562	UCHL5
chr19	51857402	51857423	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.04693	7.93885	HepG2	UCHL5
chr19	51853582	51853646	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.66621	3.02060	K562	LIN28B
chr19	51853601	51853647	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18526	15.51936	HepG2	PPIG
chr19	51856378	51856407	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.65265	5.08495	HepG2	SDAD1
chr19	51853627	51853646	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.65124	15.00096	HepG2	RPS3
chr19	51857405	51857452	-	3'-UTR,CDS,intron-Distal	4.53104	6.77706	K562	RPS3
chr19	51857402	51857425	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.44856	36.81739	K562	YBX3
chr19	51857411	51857493	-	3'-UTR,CDS,intron-Distal	3.60983	7.20571	K562	PUM1
chr19	51857455	51857523	-	3'-UTR,CDS,intron-Distal	3.05458	30.82206	HepG2	PPIG
chr19	51856488	51856572	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.37865	33.49886	HepG2	AQR
chr19	51856384	51856388	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54835	16.94719	HepG2	G3BP1
chr19	51856515	51856540	-	3'-UTR,CDS,intron-Distal	3.02934	10.21465	K562	YBX3
chr19	51857410	51857441	-	3'-UTR,CDS,intron-Distal	4.80637	28.94746	HepG2	RPS3
chr19	51856500	51856563	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.55354	12.35151	K562	AQR
chr19	51857512	51857550	-	3'-UTR,CDS,intron-Distal	3.92479	13.15899	HepG2	DDX3X
chr19	51857503	51857673	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.23021	6.47711	HepG2	PCBP1
chr19	51857459	51857547	-	3'-UTR,CDS,intron-Distal	3.54283	3.96826	K562	RPS3
chr19	51856365	51856388	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.99002	5.10493	HepG2	AQR
chr19	51853604	51853714	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.39859	7.82446	HepG2	AQR
chr19	51853565	51853667	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.82390	8.72467	K562	AQR
chr19	51856475	51856503	-	3'-UTR,CDS,intron-Distal	3.81687	23.22813	HepG2	DDX3X
chr19	51856420	51856487	-	3'-UTR,CDS,intron-Distal	3.37994	13.64041	HepG2	LARP4
chr19	51857391	51857440	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.26569	41.53248	HepG2	PPIG
chr19	51856536	51856544	-	3'-UTR,CDS,intron-Distal	3.08540	16.26881	HepG2	GRWD1
chr19	51856385	51856417	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.50431	19.31564	HepG2	RPS3
chr19	51856378	51856441	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01222	7.57476	HepG2	ZNF800
chr19	51857451	51857512	-	3'-UTR,CDS,intron-Distal	3.12254	23.00209	HepG2	DDX3X
chr19	51853611	51853637	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.83647	22.19995	HepG2	G3BP1
chr19	51856506	51856539	-	3'-UTR,CDS,intron-Distal	3.58347	24.48507	HepG2	RPS3
chr19	51857404	51857437	-	3'-UTR,CDS,intron-Distal	3.19252	25.63614	HepG2	G3BP1
chr19	51856416	51856468	-	3'-UTR,CDS,intron-Distal	5.10172	8.82884	K562	RPS3
chr19	51856453	51856472	-	3'-UTR,CDS,intron-Distal	5.07584	56.34863	HepG2	RPS3
chr19	51853603	51853648	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.57469	7.74559	HepG2	ZNF800
chr19	51856472	51856506	-	3'-UTR,CDS,intron-Distal	4.04965	30.96613	HepG2	RPS3
chr19	51857553	51857564	-	CDS,intron-Distal,intron-Proximal	4.42609	10.17596	K562	DDX3X
chr19	51857548	51857561	-	CDS,intron-Distal	3.29651	8.03889	K562	YBX3
chr19	51854186	51854227	-	intron-Distal	4.80976	8.40379	HepG2	XPO5
chr19	51853582	51853611	-	CDS,intron-Distal,intron-Proximal	3.75804	23.55841	HepG2	G3BP1
chr19	51857032	51857072	-	intron-Distal	3.87179	3.40229	HepG2	CSTF2T
chr19	51856565	51856617	-	intron-Distal,intron-Proximal	3.89436	13.76650	HepG2	BUD13
chr19	51869550	51869586	-	5'-UTR,CDS,intron-Distal	3.27555	7.10982	HepG2	GRWD1
chr19	51867414	51867480	-	intron-Distal	3.62057	4.34707	HepG2	HNRNPK
chr19	51869522	51869636	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.18756	13.33630	K562	GEMIN5
chr19	51865330	51865437	-	intron-Distal	4.71892	5.71021	K562	TARDBP
chr19	51856571	51856632	-	intron-Distal,intron-Proximal	3.28857	10.33127	HepG2	FAM120A
chr19	51853544	51853585	-	CDS,intron-Distal,intron-Proximal	4.76540	21.07622	HepG2	AQR
chr19	51869546	51869636	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.38376	5.01245	HepG2	DDX3X
chr19	51856544	51856573	-	intron-Distal,intron-Proximal	3.68801	11.03637	HepG2	PRPF4
chr19	51869460	51869538	-	CDS,intron-Distal	3.08470	6.24344	K562	PRPF8
chr19	51869463	51869518	-	intron-Distal	3.42071	3.53480	HepG2	BUD13
chr19	51857036	51857077	-	intron-Distal	4.46595	5.68315	HepG2	PRPF4
chr19	51856286	51856366	-	intron-Distal,intron-Proximal	3.85945	10.24302	HepG2	PRPF4
chr19	51856338	51856371	-	intron-Distal,intron-Proximal	3.95088	21.17872	HepG2	RBM22
chr19	51870450	51870574	-	CDS,intron-Distal	4.35748	7.56829	HepG2	HNRNPK
chr19	51869521	51869633	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.57503	30.54430	K562	DDX3X
chr19	51853586	51853608	-	CDS,intron-Distal,intron-Proximal	3.14169	5.93884	HepG2	UCHL5
chr19	51853573	51853587	-	CDS,intron-Distal,intron-Proximal	3.11241	16.20799	HepG2	PRPF8
chr19	51853585	51853604	-	CDS,intron-Distal,intron-Proximal	3.04652	3.83179	HepG2	AQR
chr19	51856572	51856631	-	intron-Distal,intron-Proximal	5.43367	28.55927	HepG2	AQR
chr19	51867344	51867457	-	intron-Distal	4.51199	9.23696	HepG2	PCBP2
chr19	51869457	51869523	-	intron-Distal	3.16625	3.60809	HepG2	HNRNPK
chr19	51870456	51870706	-	CDS,intron-Distal,intron-Proximal	3.35662	12.62468	HepG2	DDX59
chr19	51865319	51865483	-	intron-Distal	5.10169	5.14653	K562	EIF4G2
chr19	51856377	51856386	-	intron-Distal,intron-Proximal	4.68596	17.48691	HepG2	PRPF8
chr19	51856269	51856340	-	intron-Distal,intron-Proximal	3.02782	8.95948	HepG2	CSTF2T
chr19	51869474	51869526	-	CDS,intron-Distal	3.12696	7.52050	K562	AQR
chr19	51853582	51853608	-	CDS,intron-Distal,intron-Proximal	3.19312	12.23293	HepG2	RPS3
chr19	51856570	51856623	-	intron-Distal,intron-Proximal	3.53073	11.38486	HepG2	EFTUD2
chr19	51853533	51853543	-	intron-Distal,intron-Proximal	3.58111	13.29312	HepG2	PRPF8
chr19	51853543	51853573	-	intron-Distal,intron-Proximal	3.90225	21.66174	HepG2	PRPF8
chr19	51856275	51856381	-	intron-Distal,intron-Proximal	4.53082	4.58968	K562	PRPF8
chr19	51853539	51853557	-	intron-Distal,intron-Proximal	5.31979	7.63570	K562	AQR
chr19	51856306	51856338	-	intron-Distal,intron-Proximal	3.75472	19.69193	HepG2	RBM22
chr19	51867088	51867221	-	intron-Distal	3.70316	9.70979	HepG2	PCBP2
chr19	51866075	51866141	-	intron-Distal	3.95865	3.27946	HepG2	HNRNPM
chr19	51853645	51853695	-	intron-Distal,intron-Proximal	5.31545	9.36170	HepG2	SF3A3
chr19	51866493	51866587	-	intron-Distal	3.57106	5.34579	HepG2	HNRNPK
chr19	51856322	51856365	-	intron-Distal,intron-Proximal	5.99743	11.41187	HepG2	AQR
chr19	51856287	51856352	-	intron-Distal,intron-Proximal	3.07353	10.70213	HepG2	BUD13
chr19	51856573	51856593	-	intron-Distal,intron-Proximal	4.88668	14.34689	HepG2	PRPF4
chr19	51856272	51856337	-	intron-Distal,intron-Proximal	3.47186	10.67052	HepG2	EFTUD2
chr19	51869525	51869612	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.87615	11.98060	K562	DROSHA
chr19	51856336	51856377	-	intron-Distal,intron-Proximal	3.79936	16.51264	HepG2	PRPF8
chr19	51856593	51856633	-	intron-Distal,intron-Proximal	4.77101	13.68497	HepG2	PRPF4
chr19	51870446	51870619	-	CDS,intron-Distal,intron-Proximal	3.76454	3.97821	HepG2	PABPN1
chr19	51870626	51870754	-	CDS,intron-Distal,intron-Proximal	3.26454	3.97821	HepG2	PABPN1
chr19	51870459	51870643	-	CDS,intron-Distal,intron-Proximal	3.32387	3.45841	K562	HNRNPK
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTD-2616J11.11 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for CTD-2616J11.11 is not available on ENCORE database.
6 RBPs can affect the levels of CTD-2616J11.11.

The Knockdown/knockout RNA-Seq assay for CTD-2616J11.11 is not available on ENCORE database.

6 RBPs can affect the gene expression of CTD-2616J11.11 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTD-2616J11.11	ENSG00000269403.1	12.49190	1.20050	3.37920	2.13760	1.58140	HepG2	DDX3X
CTD-2616J11.11	ENSG00000269403.1	11.85140	0.92890	3.67340	2.39610	1.68780	HepG2	NOL12
CTD-2616J11.11	ENSG00000269403.1	18.69800	3.73160	2.32490	2.00330	1.54370	HepG2	RBM22
CTD-2616J11.11	ENSG00000269403.1	12.25100	1.78820	2.77620	2.20510	1.70090	HepG2	SRSF9
CTD-2616J11.11	ENSG00000269403.1	10.94190	0.86350	3.66350	2.06170	1.31820	HepG2	TUFM
CTD-2616J11.11	ENSG00000269403.1	15.81520	0.00000	99999.99990	5.47560	4.40190	HepG2	UCHL5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTD-2616J11.11

General Information

Functions

Localization

Domains (AlphaFold: CTD-2616J11.11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTD-2616J11.11 is not avaliable on ENCORE database.

33 proteins are bound to CTD-2616J11.11 RNA:

eCLIP assay for CTD-2616J11.11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTD-2616J11.11 is not available on ENCORE database.

6 RBPs can affect the gene expression of CTD-2616J11.11 :

The Knockdown/knockout RNA-Seq assay for CTD-2616J11.11 is not available on ENCORE database.

No RBPs affect the alternative splcing events of CTD-2616J11.11 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CTD-2616J11.11 is not avaliable on ENCORE database.