CTC-459F4.3

General Information

Gene Name : CTC-459F4.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTC-459F4.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTC-459F4.3 is not avaliable on ENCORE database.

Proteins bound to RNA

CTC-459F4.3 RNA is bound by 5 proteins.

eCLIP assay for CTC-459F4.3 is not avaliable on ENCORE database.

5 proteins are bound to CTC-459F4.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	28286846	28286920	+	intron-Distal	5.54209	6.79597	HepG2	XPO5
chr19	28294156	28294247	+	intron-Distal	4.09583	3.90026	K562	KHSRP
chr19	28287397	28287481	+	intron-Distal	4.51282	5.40707	K562	CSTF2T
chr19	28287397	28287484	+	intron-Distal	4.88229	7.22648	HepG2	CSTF2
chr19	28291330	28291496	+	intron-Distal	4.12249	4.77135	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CTC-459F4.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTC-459F4.3 is not available on ENCORE database.
18 RBPs can affect the levels of CTC-459F4.3.

The Knockdown/knockout RNA-Seq assay for CTC-459F4.3 is not available on ENCORE database.

18 RBPs can affect the gene expression of CTC-459F4.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTC-459F4.3	ENSG00000267575.2	160.78740	98.96220	0.70010	2.40390	1.81630	HepG2	DDX3X
CTC-459F4.3	ENSG00000267575.2	123.91670	60.18630	1.04180	3.53730	2.67690	HepG2	DDX55
CTC-459F4.3	ENSG00000267575.2	192.32140	126.61350	0.60300	2.70730	2.11160	HepG2	ETF1
CTC-459F4.3	ENSG00000267575.2	67.69520	114.33550	-0.75610	2.33480	1.71570	HepG2	SF3A3
CTC-459F4.3	ENSG00000267575.2	46.19020	83.86470	-0.86050	2.09780	1.45410	HepG2	TARDBP
CTC-459F4.3	ENSG00000267575.2	202.63510	292.25080	-0.52830	2.83870	2.26410	K562	AGGF1
CTC-459F4.3	ENSG00000267575.2	541.76770	374.46460	0.53270	3.48810	2.84500	K562	AQR
CTC-459F4.3	ENSG00000267575.2	137.51280	206.39690	-0.58590	2.24070	1.46110	K562	BOP1
CTC-459F4.3	ENSG00000267575.2	308.37630	438.06310	-0.50640	4.09490	3.32320	K562	DDX47
CTC-459F4.3	ENSG00000267575.2	267.53690	175.62460	0.60710	3.11610	2.24700	K562	EIF4A3
CTC-459F4.3	ENSG00000267575.2	134.90190	209.52480	-0.63520	2.67090	1.88940	K562	GPKOW
CTC-459F4.3	ENSG00000267575.2	531.33750	395.87130	0.42450	2.81280	1.74570	K562	HNRNPL
CTC-459F4.3	ENSG00000267575.2	394.83180	260.60260	0.59930	3.04590	2.06310	K562	HNRNPM
CTC-459F4.3	ENSG00000267575.2	230.77970	322.72240	-0.48380	2.09460	1.38730	K562	KIF1C
CTC-459F4.3	ENSG00000267575.2	244.81630	361.80150	-0.56350	2.93530	2.07790	K562	PCBP3
CTC-459F4.3	ENSG00000267575.2	223.37860	301.57390	-0.43300	1.77110	1.31710	K562	PUS1
CTC-459F4.3	ENSG00000267575.2	121.20940	201.74170	-0.73500	2.99020	2.14030	K562	RPS19
CTC-459F4.3	ENSG00000267575.2	240.72010	342.29190	-0.50790	3.52370	2.57670	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTC-459F4.3 is not available on ENCORE database.

3 RBPs can affect the splicing of CTC-459F4.3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTC-459F4.3	ENSG00000267575.2	chr19	+	28288661	28289084	28284430	28284558	28296512	28296680	-0.47000	0.00021	0.00586	excluded	K562	SRSF1
SE	CTC-459F4.3	ENSG00000267575.2	chr19	+	28288661	28289084	28284430	28284558	28296512	28296680	0.20000	0.00071	0.04941	included	K562	HNRNPL
SE	CTC-459F4.3	ENSG00000267575.2	chr19	+	28288661	28289084	28284430	28284558	28296512	28296680	-0.48500	0.00001	0.00068	excluded	K562	TARDBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTC-459F4.3

General Information

Functions

Localization

Domains (AlphaFold: CTC-459F4.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTC-459F4.3 is not avaliable on ENCORE database.

5 proteins are bound to CTC-459F4.3 RNA:

eCLIP assay for CTC-459F4.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTC-459F4.3 is not available on ENCORE database.

18 RBPs can affect the gene expression of CTC-459F4.3 :

The Knockdown/knockout RNA-Seq assay for CTC-459F4.3 is not available on ENCORE database.

3 RBPs can affect the splicing of CTC-459F4.3 :

The Knockdown/knockout RNA-Seq assay for CTC-459F4.3 is not avaliable on ENCORE database.