CMTM7

General Information

Gene Name       : CMTM7
Gene ID             : ENSG00000153551.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CMTM7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CMTM7ENSG00000153551.1310.5214.3112.41ENCSR000AEF
HepG2CMTM7ENSG00000153551.1324.1033.0328.57ENCSR985KAT
K562CMTM7ENSG00000153551.130.240.170.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CMTM7 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CMTM7 RNA is bound by 4 proteins.  







eCLIP assay for CMTM7 is not avaliable on ENCORE database.





4 proteins are bound to CMTM7 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr33249615032496228+3'-UTR,intron-Distal3.375183.01032HepG2LARP4
chr33243335032433437+5'-UTR,CDS4.897755.35746HepG2DDX3X
chr33243348432433548+CDS4.074574.82666HepG2DDX3X
chr33243343732433484+CDS3.538393.16711HepG2DDX3X
chr33248348332483543+CDS,intron-Proximal4.136397.56654HepG2PRPF8
chr33248819832488356+intron-Distal4.450315.31529HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CMTM7 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CMTM7 is not available on ENCORE database.

  • 37 RBPs can affect the levels of CMTM7.  








The Knockdown/knockout RNA-Seq assay for CMTM7 is not available on ENCORE database.





37 RBPs can affect the gene expression of CMTM7 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CMTM7ENSG00000153551.9142.69400240.95210-0.755803.852602.62820HepG2AKAP8
CMTM7ENSG00000153551.9231.13890301.89760-0.385301.997001.33130HepG2AKAP8L
CMTM7ENSG00000153551.9371.10630524.71910-0.499704.234703.41740HepG2AUH
CMTM7ENSG00000153551.9167.33510258.39960-0.626902.954202.24710HepG2CPSF6
CMTM7ENSG00000153551.9353.84420471.66290-0.414603.437902.62760HepG2DAZAP1
CMTM7ENSG00000153551.9179.07800277.60110-0.632402.983902.36830HepG2EIF2S1
CMTM7ENSG00000153551.9379.12660602.43590-0.668107.806106.88350HepG2ETF1
CMTM7ENSG00000153551.991.56540233.89870-1.353009.224507.15420HepG2FKBP4
CMTM7ENSG00000153551.9442.19370309.620600.514102.831602.13080HepG2FXR1
CMTM7ENSG00000153551.9171.89760287.14700-0.740204.023303.22920HepG2G3BP1
CMTM7ENSG00000153551.9224.25160350.11050-0.642703.715002.92130HepG2HNRNPC
CMTM7ENSG00000153551.9182.03130347.79730-0.934107.291906.34430HepG2HNRNPU
CMTM7ENSG00000153551.9431.58890309.729300.478502.415501.80170HepG2MAGOH
CMTM7ENSG00000153551.9188.21350283.79300-0.592502.874702.13950HepG2PABPC4
CMTM7ENSG00000153551.9396.96350303.580600.386802.392601.81910HepG2PCBP1
CMTM7ENSG00000153551.9191.98840283.04340-0.560002.240901.30410HepG2PCBP2
CMTM7ENSG00000153551.9108.42860334.55200-1.6255018.1818016.77540HepG2QKI
CMTM7ENSG00000153551.9172.10260273.07560-0.666002.215401.57940HepG2RAVER1
CMTM7ENSG00000153551.9196.73740303.62690-0.626003.637202.87060HepG2RBM25
CMTM7ENSG00000153551.9277.65550482.12460-0.796104.150403.34110HepG2RPLP0
CMTM7ENSG00000153551.9117.74550268.36730-1.188507.000305.55050HepG2RPS10
CMTM7ENSG00000153551.9336.60190428.06030-0.346802.279101.63240HepG2SLBP
CMTM7ENSG00000153551.9182.66480307.82500-0.752903.246202.39780HepG2SNRNP70
CMTM7ENSG00000153551.9326.46320439.61020-0.429302.334001.69050HepG2SRSF7
CMTM7ENSG00000153551.9208.62470273.10190-0.388501.957501.47820HepG2SRSF9
CMTM7ENSG00000153551.9391.64610493.79130-0.334402.218501.74710HepG2SSB
CMTM7ENSG00000153551.9206.62140306.49260-0.568903.464402.42140HepG2SUPT6H
CMTM7ENSG00000153551.9142.52660279.73900-0.972905.694704.77820HepG2SUPV3L1
CMTM7ENSG00000153551.9200.12680338.03010-0.756204.825504.20250HepG2TIAL1
CMTM7ENSG00000153551.9313.26740461.64950-0.559402.857902.00870HepG2UBE2L3
CMTM7ENSG00000153551.9613.81690343.310700.838206.681105.81890HepG2UTP3
CMTM7ENSG00000153551.9100.71750160.14640-0.669102.362001.35800HepG2XPO5
CMTM7ENSG00000153551.9197.50920361.48270-0.872008.803407.71850HepG2ZC3H8
CMTM7ENSG00000153551.917.860000.493505.177404.412803.23000K562PSIP1
CMTM7ENSG00000153551.915.232702.007002.923902.820502.15080K562PTBP1
CMTM7ENSG00000153551.917.599903.029502.538302.497501.97550K562PUS1
CMTM7ENSG00000153551.927.451801.326904.370605.699604.52260K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CMTM7 is not available on ENCORE database.





2 RBPs can affect the splicing of CMTM7 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECMTM7ENSG00000153551.9chr3+3249094532491044324833313248350532493883324939650.128000.000070.00770includedHepG2RBM22
SECMTM7ENSG00000153551.9chr3+324909453249104432483331324835053249388332493965-0.423000.000000.00000excludedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CMTM7 is not avaliable on ENCORE database.