ZKSCAN1

General Information

Gene Name : ZKSCAN1
Gene ID : ENSG00000106261.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZKSCAN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZKSCAN1	ENSG00000106261.16	12.20	12.09	12.14	ENCSR000AEF
HepG2	ZKSCAN1	ENSG00000106261.16	15.97	19.38	17.68	ENCSR985KAT
K562	ZKSCAN1	ENSG00000106261.16	17.22	18.38	17.80	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
ZKSCAN1	Ribo-STAMP-293T	shRNA			BGRSLV05-63,BGRSLV05-64	BGRSLV05-1,BGRSLV05-2		NotSatisfied	ENCORE2
ZKSCAN1	Ribo-STAMP-293T	shRNA			BGRSLV07-49,BGRSLV07-50	BGRSLV07-1,BGRSLV07-2		NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZKSCAN1 is not avaliable on ENCORE database.

Proteins bound to RNA

ZKSCAN1 RNA is bound by 40 proteins.

CanvasJS.com

eCLIP assay for ZKSCAN1 is not avaliable on ENCORE database.

40 proteins are bound to ZKSCAN1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	99629812	99629895	+	intron-Distal	6.60948	45.99060	HepG2	QKI
chr7	99628000	99628013	+	intron-Proximal	4.21504	36.89405	HepG2	PRPF8
chr7	99628013	99628038	+	intron-Proximal	4.12866	36.59681	HepG2	PRPF8
chr7	99631086	99631205	+	CDS	5.73628	34.58497	HepG2	BCLAF1
chr7	99627996	99628000	+	CDS,intron-Proximal	4.33091	34.58145	HepG2	PRPF8
chr7	99629953	99630096	+	intron-Distal	4.64052	29.15513	HepG2	PCBP2
chr7	99629288	99629359	+	intron-Distal	4.60519	27.43753	HepG2	QKI
chr7	99631169	99631250	+	CDS	3.53258	25.62086	HepG2	HLTF
chr7	99633397	99633462	+	3'-UTR	4.36738	25.47184	HepG2	EIF3H
chr7	99633472	99633508	+	3'-UTR	5.59261	22.75173	K562	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 159 entries

eCLIP assay for ZKSCAN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZKSCAN1 is not available on ENCORE database.
123 RBPs can affect the levels of ZKSCAN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZKSCAN1 is not available on ENCORE database.

123 RBPs can affect the gene expression of ZKSCAN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZKSCAN1	ENSG00000106261.12	2377.81330	5559.65740	-1.22540	81.33900	78.83390	HepG2	UTP3
ZKSCAN1	ENSG00000106261.12	2411.25980	4267.20200	-0.82350	34.60810	32.68010	HepG2	HNRNPU
ZKSCAN1	ENSG00000106261.12	2871.22120	7954.98260	-1.47020	32.97620	31.40340	HepG2	AKAP1
ZKSCAN1	ENSG00000106261.12	1445.75790	3543.03400	-1.29320	31.50530	29.01060	HepG2	GEMIN5
ZKSCAN1	ENSG00000106261.12	2905.00510	7058.07500	-1.28070	26.49010	24.71480	HepG2	MATR3
ZKSCAN1	ENSG00000106261.12	4646.26490	6908.23570	-0.57220	24.30460	22.75490	HepG2	SUCLG1
ZKSCAN1	ENSG00000106261.12	4594.35150	6838.03020	-0.57370	21.42550	20.37240	HepG2	SRSF1
ZKSCAN1	ENSG00000106261.12	5249.25620	7608.32890	-0.53550	20.60530	19.56880	HepG2	SRFBP1
ZKSCAN1	ENSG00000106261.12	6117.39440	3211.36530	0.92960	20.45080	18.66840	HepG2	NSUN2
ZKSCAN1	ENSG00000106261.12	3782.41820	7620.59520	-1.01060	19.24090	17.75030	HepG2	DDX3X
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 144 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZKSCAN1 is not available on ENCORE database.

8 RBPs can affect the splicing of ZKSCAN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628578	99628723	99627871	99627998	99630927	99631894	0.28300	0.00000	0.00000	included	HepG2	U2AF2
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628538	99628723	99627871	99627998	99630927	99631894	0.27300	0.00000	0.00000	included	K562	AQR
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628578	99628723	99627871	99627998	99630927	99631894	0.24000	0.00000	0.00000	included	HepG2	FTO
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628547	99628723	99627871	99627998	99630927	99631894	0.51800	0.00001	0.00556	included	HepG2	UCHL5
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628547	99628723	99627871	99627998	99630927	99631894	0.20900	0.00005	0.00382	included	HepG2	MATR3
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628578	99628723	99627871	99627998	99630927	99631894	0.23000	0.00005	0.00634	included	HepG2	TIAL1
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628578	99628723	99627871	99627998	99630927	99631894	0.14600	0.00058	0.06560	included	HepG2	SSB
SE	ZKSCAN1	ENSG00000106261.12	chr7	+	99628578	99628723	99627871	99627998	99630927	99631894	0.11200	0.00294	0.07082	included	K562	AKAP8L

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZKSCAN1

General Information

Functions

Localization

Domains (AlphaFold: ZKSCAN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZKSCAN1 is not avaliable on ENCORE database.

40 proteins are bound to ZKSCAN1 RNA:

eCLIP assay for ZKSCAN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZKSCAN1 is not available on ENCORE database.

123 RBPs can affect the gene expression of ZKSCAN1 :

The Knockdown/knockout RNA-Seq assay for ZKSCAN1 is not available on ENCORE database.

8 RBPs can affect the splicing of ZKSCAN1 :

The Knockdown/knockout RNA-Seq assay for ZKSCAN1 is not avaliable on ENCORE database.