YIPF3

General Information

Gene Name : YIPF3
Gene ID : ENSG00000137207.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: YIPF3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	YIPF3	ENSG00000137207.11	21.16	28.83	24.99	ENCSR000AEF
HepG2	YIPF3	ENSG00000137207.11	86.72	68.75	77.73	ENCSR985KAT
K562	YIPF3	ENSG00000137207.11	56.70	50.68	53.69	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for YIPF3 is not avaliable on ENCORE database.

Proteins bound to RNA

YIPF3 RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for YIPF3 is not avaliable on ENCORE database.

18 proteins are bound to YIPF3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	43479593	43479646	-	3'-UTR,intron-Distal,intron-Proximal	6.08385	46.80612	HepG2	PCBP2
chr6	43479646	43479663	-	3'-UTR,intron-Distal,intron-Proximal	5.83273	38.51038	HepG2	PCBP2
chr6	43484545	43484624	-	5'-UTR,intron-Distal	3.66432	19.80460	HepG2	DDX3X
chr6	43479910	43479990	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.88891	17.16113	HepG2	PCBP2
chr6	43479663	43479692	-	3'-UTR,intron-Distal,intron-Proximal	4.58552	16.67387	HepG2	PCBP2
chr6	43483730	43483831	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.19821	16.38988	HepG2	RPS3
chr6	43480498	43480548	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.85970	13.88152	K562	YBX3
chr6	43479907	43480000	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.55729	13.51584	HepG2	LARP4
chr6	43479738	43479847	-	3'-UTR,intron-Distal,intron-Proximal	5.15567	13.18422	HepG2	SUB1
chr6	43479997	43480054	-	3'-UTR,CDS,intron-Distal	3.40052	11.78310	HepG2	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 51 entries

eCLIP assay for YIPF3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for YIPF3 is not available on ENCORE database.
103 RBPs can affect the levels of YIPF3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for YIPF3 is not available on ENCORE database.

103 RBPs can affect the gene expression of YIPF3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
YIPF3	ENSG00000137207.7	4222.23310	2509.12890	0.75070	38.53720	37.11200	HepG2	ZNF622
YIPF3	ENSG00000137207.7	1834.25880	868.41990	1.07860	25.07460	22.94650	K562	SRSF1
YIPF3	ENSG00000137207.7	1542.54430	2725.54810	-0.82120	21.38860	20.03630	HepG2	TAF15
YIPF3	ENSG00000137207.7	3567.27800	1827.29840	0.96500	20.77960	19.34500	K562	AQR
YIPF3	ENSG00000137207.7	2494.44830	1697.23910	0.55540	13.84610	12.50370	HepG2	DNAJC2
YIPF3	ENSG00000137207.7	2792.87810	1890.82410	0.56260	13.76570	12.12450	HepG2	PARN
YIPF3	ENSG00000137207.7	2565.01700	1768.99480	0.53590	13.12800	11.70210	K562	UPF1
YIPF3	ENSG00000137207.7	1732.68860	1035.61760	0.74240	12.11950	10.94450	K562	HNRNPC
YIPF3	ENSG00000137207.7	2007.51280	3022.08460	-0.59010	12.00950	10.84250	HepG2	QKI
YIPF3	ENSG00000137207.7	1515.03000	878.79410	0.78560	10.70060	9.15670	K562	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for YIPF3 is not available on ENCORE database.

13 RBPs can affect the splicing of YIPF3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	is_included	Cell Line	Affected by RBP
SE	YIPF3	ENSG00000137207.7	chr6	-	43480806	43480938	43480498	43480612	43481096	43481189	-0.12600	excluded	HepG2	U2AF1
SE	YIPF3	ENSG00000137207.7	chr6	-	43480806	43480938	43480498	43480612	43481096	43481189	-0.30700	excluded	HepG2	U2AF2
SE	YIPF3	ENSG00000137207.7	chr6	-	43483332	43483439	43481186	43481371	43483626	43484129	-0.05400	excluded	K562	AQR
A3SS	YIPF3	ENSG00000137207.7	chr6	-	43480195	43480394	43480195	43480301	43480498	43480723	0.08200	longer	K562	AQR
A3SS	YIPF3	ENSG00000137207.7	chr6	-	43480794	43480998	43480794	43480938	43481096	43481245	0.23200	longer	K562	AQR
A3SS	YIPF3	ENSG00000137207.7	chr6	-	43481325	43481479	43481325	43481371	43483332	43483439	0.09400	longer	K562	AQR
A3SS	YIPF3	ENSG00000137207.7	chr6	-	43481096	43481245	43481096	43481189	43481325	43481371	0.16400	longer	K562	AQR
A3SS	YIPF3	ENSG00000137207.7	chr6	-	43480794	43480938	43480794	43480836	43481096	43481179	-0.14100	shorter	HepG2	U2AF1
A3SS	YIPF3	ENSG00000137207.7	chr6	-	43480806	43480938	43480806	43480836	43481096	43481179	-0.19600	shorter	K562	U2AF1
A5SS	YIPF3	ENSG00000137207.7	chr6	-	43480806	43481189	43481096	43481189	43480498	43480612	-0.37800	shorter	HepG2	U2AF2

Showing 1 to 10 of 48 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

YIPF3

General Information

Functions

Localization

Domains (AlphaFold: YIPF3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for YIPF3 is not avaliable on ENCORE database.

18 proteins are bound to YIPF3 RNA:

eCLIP assay for YIPF3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for YIPF3 is not available on ENCORE database.

103 RBPs can affect the gene expression of YIPF3 :

The Knockdown/knockout RNA-Seq assay for YIPF3 is not available on ENCORE database.

13 RBPs can affect the splicing of YIPF3 :

The Knockdown/knockout RNA-Seq assay for YIPF3 is not avaliable on ENCORE database.