WDR54

General Information

Gene Name : WDR54
Gene ID : ENSG00000005448.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: WDR54)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	WDR54	ENSG00000005448.16	14.10	29.26	21.68	ENCSR000AEF
HepG2	WDR54	ENSG00000005448.16	7.98	5.55	6.77	ENCSR985KAT
K562	WDR54	ENSG00000005448.16	4.58	4.32	4.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for WDR54 is not avaliable on ENCORE database.

Proteins bound to RNA

WDR54 RNA is bound by 1 proteins.

CanvasJS.com

eCLIP assay for WDR54 is not avaliable on ENCORE database.

1 proteins are bound to WDR54 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	74651011	74651088	+	CDS	4.47357	6.10169	K562	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 1 of 1 entries

eCLIP assay for WDR54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for WDR54 is not available on ENCORE database.
127 RBPs can affect the levels of WDR54.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for WDR54 is not available on ENCORE database.

127 RBPs can affect the gene expression of WDR54 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
WDR54	ENSG00000005448.12	22.51020	298.22530	-3.72780	54.81490	53.24850	HepG2	SSB
WDR54	ENSG00000005448.12	70.85670	363.89770	-2.36060	37.86430	36.11350	HepG2	ETF1
WDR54	ENSG00000005448.12	33.34420	235.78670	-2.82200	30.85000	29.50720	HepG2	TIAL1
WDR54	ENSG00000005448.12	23.66490	216.02030	-3.19030	28.64670	26.62210	HepG2	EIF4A3
WDR54	ENSG00000005448.12	100.87140	343.50790	-1.76780	23.59990	22.51030	HepG2	SRFBP1
WDR54	ENSG00000005448.12	32.18100	218.08840	-2.76060	23.82430	22.01870	HepG2	MAGOH
WDR54	ENSG00000005448.12	46.28550	221.37700	-2.25790	22.00070	20.52510	HepG2	DKC1
WDR54	ENSG00000005448.12	618.90380	203.39470	1.60530	19.74340	18.29320	HepG2	DDX6
WDR54	ENSG00000005448.12	34.75830	176.79980	-2.34670	18.97390	17.50200	K562	FXR1
WDR54	ENSG00000005448.12	34.84690	194.27650	-2.47900	18.43970	16.65550	HepG2	CIRBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 147 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for WDR54 is not available on ENCORE database.

2 RBPs can affect the splicing of WDR54 :

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Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	WDR54	ENSG00000005448.12	chr2	+	74650604	74650658			74650445	74650512	74650981	74651109	0.12000	0.00012	0.01187	included	HepG2	AKAP1
SE	WDR54	ENSG00000005448.12	chr2	+	74650604	74650658			74650445	74650512	74650981	74651109	0.11500	0.00137	0.09422	included	HepG2	DDX6

Showing 1 to 2 of 2 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

WDR54

General Information

Functions

Localization

Domains (AlphaFold: WDR54)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for WDR54 is not avaliable on ENCORE database.

1 proteins are bound to WDR54 RNA:

eCLIP assay for WDR54 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for WDR54 is not available on ENCORE database.

127 RBPs can affect the gene expression of WDR54 :

The Knockdown/knockout RNA-Seq assay for WDR54 is not available on ENCORE database.

2 RBPs can affect the splicing of WDR54 :

The Knockdown/knockout RNA-Seq assay for WDR54 is not avaliable on ENCORE database.