TTC7A

General Information

Gene Name : TTC7A
Gene ID : ENSG00000068724.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TTC7A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TTC7A	ENSG00000068724.15	7.83	17.27	12.55	ENCSR000AEF
HepG2	TTC7A	ENSG00000068724.15	26.64	14.96	20.80	ENCSR985KAT
K562	TTC7A	ENSG00000068724.15	6.34	5.15	5.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TTC7A is not avaliable on ENCORE database.

Proteins bound to RNA

TTC7A RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for TTC7A is not avaliable on ENCORE database.

19 proteins are bound to TTC7A RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	47234371	47234430	+	intron-Distal	6.22511	78.08812	HepG2	RBFOX2
chr2	47234319	47234371	+	intron-Distal	6.72483	56.02109	HepG2	RBFOX2
chr2	47185872	47185993	+	intron-Distal	5.17983	24.56620	HepG2	RBFOX2
chr2	47235189	47235263	+	intron-Distal	5.24393	19.97307	HepG2	RBFOX2
chr2	47184136	47184152	+	5'-UTR,CDS,intron-Proximal	4.78144	15.51998	HepG2	PRPF8
chr2	47184152	47184168	+	intron-Proximal	4.57443	14.95101	HepG2	PRPF8
chr2	47185671	47185812	+	5'-UTR,intron-Distal,intron-Proximal	4.60465	14.78532	HepG2	RBFOX2
chr2	47235138	47235189	+	intron-Distal	5.70368	14.15858	HepG2	RBFOX2
chr2	47184168	47184189	+	intron-Proximal	4.26867	14.10710	HepG2	PRPF8
chr2	47185812	47185872	+	intron-Distal	5.67876	13.43272	HepG2	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 56 entries

eCLIP assay for TTC7A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TTC7A is not available on ENCORE database.
75 RBPs can affect the levels of TTC7A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TTC7A is not available on ENCORE database.

75 RBPs can affect the gene expression of TTC7A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TTC7A	ENSG00000068724.11	1992.55060	1084.99740	0.87680	34.06510	32.69640	HepG2	ZNF622
TTC7A	ENSG00000068724.11	834.46080	1723.14090	-1.04610	32.08340	30.63030	HepG2	PTBP1
TTC7A	ENSG00000068724.11	1029.29840	1872.59660	-0.86340	25.45970	24.34170	HepG2	SRSF1
TTC7A	ENSG00000068724.11	1017.60530	1866.27210	-0.87500	20.23940	18.77190	HepG2	QKI
TTC7A	ENSG00000068724.11	866.69020	1693.73620	-0.96660	19.77460	18.07930	HepG2	RBM25
TTC7A	ENSG00000068724.11	869.05620	1534.42000	-0.82020	17.29290	16.22430	HepG2	RBM22
TTC7A	ENSG00000068724.11	789.68270	1674.60800	-1.08450	17.36410	15.58840	HepG2	ASCC1
TTC7A	ENSG00000068724.11	1146.28630	1835.83960	-0.67950	15.80020	14.55680	HepG2	ETF1
TTC7A	ENSG00000068724.11	1119.35740	1794.06930	-0.68060	15.64640	14.41660	HepG2	SF3B4
TTC7A	ENSG00000068724.11	1061.51660	1693.47370	-0.67390	15.64460	14.39160	HepG2	PCBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 78 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TTC7A is not available on ENCORE database.

9 RBPs can affect the splicing of TTC7A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.16200	0.00000	0.00022	included	HepG2	G3BP1
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.16700	0.00000	0.00006	included	HepG2	RBM22
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.31000	0.00000	0.00000	included	HepG2	PTBP1
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.18000	0.00001	0.00262	included	HepG2	SUPV3L1
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.10000	0.00018	0.01634	included	HepG2	AKAP1
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.09600	0.00032	0.07775	included	HepG2	NOL12
SE	TTC7A	ENSG00000068724.11	chr2	+	47185510	47185691	47183977	47184146	47202111	47202242	0.13700	0.00033	0.03609	included	HepG2	PRPF8
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.12900	0.00064	0.09807	included	HepG2	DDX55
SE	TTC7A	ENSG00000068724.11	chr2	+	47185633	47185691	47183977	47184146	47202111	47202242	0.22700	0.00130	0.04907	included	K562	PTBP1
SE	TTC7A	ENSG00000068724.11	chr2	+	47273453	47273570	47256362	47256523	47277087	47277185	-0.23700	0.00158	0.05541	excluded	HepG2	HNRNPC

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TTC7A

General Information

Functions

Localization

Domains (AlphaFold: TTC7A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TTC7A is not avaliable on ENCORE database.

19 proteins are bound to TTC7A RNA:

eCLIP assay for TTC7A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TTC7A is not available on ENCORE database.

75 RBPs can affect the gene expression of TTC7A :

The Knockdown/knockout RNA-Seq assay for TTC7A is not available on ENCORE database.

9 RBPs can affect the splicing of TTC7A :

The Knockdown/knockout RNA-Seq assay for TTC7A is not avaliable on ENCORE database.