STRA13

General Information

Gene Name : STRA13
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: STRA13)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for STRA13 is not avaliable on ENCORE database.

Proteins bound to RNA

STRA13 RNA is bound by 33 proteins.

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eCLIP assay for STRA13 is not avaliable on ENCORE database.

33 proteins are bound to STRA13 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	79980416	79980520	-	intron-Distal	4.79980	40.40371	HepG2	EFTUD2
chr17	79977038	79977164	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.50694	28.70305	HepG2	BUD13
chr17	79977044	79977167	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.49644	25.11153	K562	AQR
chr17	79977025	79977097	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.94521	19.88303	HepG2	PRPF8
chr17	79977733	79977775	-	CDS,intron-Distal,intron-Proximal	5.18888	19.47813	K562	DDX3X
chr17	79976817	79976905	-	3'-UTR,intron-Distal	3.63011	18.10282	K562	PABPC4
chr17	79977029	79977165	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28978	17.39397	K562	PRPF8
chr17	79980700	79980752	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.29637	17.31231	K562	DDX3X
chr17	79980344	79980416	-	intron-Distal	4.39217	16.04319	HepG2	EFTUD2
chr17	79977775	79977786	-	CDS,intron-Distal,intron-Proximal	5.03728	15.60125	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 90 entries

eCLIP assay for STRA13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for STRA13 is not available on ENCORE database.
110 RBPs can affect the levels of STRA13.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for STRA13 is not available on ENCORE database.

110 RBPs can affect the gene expression of STRA13 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
STRA13	ENSG00000169689.10	894.79350	436.50710	1.03540	25.21120	23.39370	HepG2	HNRNPL
STRA13	ENSG00000169689.10	1070.30620	477.01940	1.16580	24.01800	22.13940	K562	PTBP1
STRA13	ENSG00000169689.10	1373.76060	663.03280	1.05090	21.09940	19.53980	K562	FXR1
STRA13	ENSG00000169689.10	461.91460	910.48500	-0.97900	20.55250	19.51700	HepG2	SRFBP1
STRA13	ENSG00000169689.10	32.17010	204.07920	-2.66530	20.96250	18.48300	K562	G3BP2
STRA13	ENSG00000169689.10	446.61740	806.13270	-0.85200	12.17740	11.24920	HepG2	RBM22
STRA13	ENSG00000169689.10	558.06210	319.70550	0.80360	11.47960	10.55320	HepG2	ZNF622
STRA13	ENSG00000169689.10	862.76420	1352.41870	-0.64850	11.59410	10.27210	K562	EIF2S2
STRA13	ENSG00000169689.10	581.83370	320.09510	0.86200	10.77340	9.19700	K562	EIF3G
STRA13	ENSG00000169689.10	539.88170	1013.14690	-0.90810	10.39070	8.78600	K562	PCBP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for STRA13 is not available on ENCORE database.

21 RBPs can affect the splicing of STRA13 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	STRA13	ENSG00000169689.10	chr17	-	79977516	79977570	79977168	79977257	79977733	79977785	-0.22700	0.00016	excluded	K562	PRPF8
SE	STRA13	ENSG00000169689.10	chr17	-	79977385	79977570	79977168	79977257	79977733	79977785	-0.27100	0.00000	excluded	HepG2	U2AF1
SE	STRA13	ENSG00000169689.10	chr17	-	79977516	79977570	79977168	79977257	79977733	79977785	-0.21300	0.00066	excluded	K562	PCBP1
SE	STRA13	ENSG00000169689.10	chr17	-	79977516	79977570	79977168	79977257	79977733	79977785	0.34300	0.00000	included	HepG2	QKI
SE	STRA13	ENSG00000169689.10	chr17	-	79977516	79977570	79977168	79977257	79977733	79977785	-0.23200	0.00001	excluded	HepG2	U2AF2
SE	STRA13	ENSG00000169689.10	chr17	-	79977516	79977570	79977168	79977257	79977733	79977785	-0.21800	0.00000	excluded	K562	FXR1
SE	STRA13	ENSG00000169689.10	chr17	-	79977516	79977570	79977168	79977257	79977733	79977785	0.32400	0.00000	included	HepG2	TIA1
SE	STRA13	ENSG00000169689.10	chr17	-	79977385	79977570	79977168	79977257	79977733	79977785	0.24500	0.00000	included	HepG2	SRSF1
A3SS	STRA13	ENSG00000169689.10	chr17	-	79977168	79977288	79977168	79977257	79977733	79977785	0.06100	0.00003	longer	K562	AQR
RI	STRA13	ENSG00000169689.10	chr17	-	79977168	79977785	79977168	79977257	79977733	79977785	0.06800	0.00001	included	K562	AQR

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

STRA13

General Information

Functions

Localization

Domains (AlphaFold: STRA13)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for STRA13 is not avaliable on ENCORE database.

33 proteins are bound to STRA13 RNA:

eCLIP assay for STRA13 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for STRA13 is not available on ENCORE database.

110 RBPs can affect the gene expression of STRA13 :

The Knockdown/knockout RNA-Seq assay for STRA13 is not available on ENCORE database.

21 RBPs can affect the splicing of STRA13 :

The Knockdown/knockout RNA-Seq assay for STRA13 is not avaliable on ENCORE database.