SRM

General Information

Gene Name : SRM
Gene ID : ENSG00000116649.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SRM)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SRM	ENSG00000116649.9	37.53	90.79	64.16	ENCSR000AEF
HepG2	SRM	ENSG00000116649.9	119.91	48.80	84.35	ENCSR985KAT
K562	SRM	ENSG00000116649.9	245.99	198.99	222.49	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SRM is not avaliable on ENCORE database.

Proteins bound to RNA

SRM RNA is bound by 13 proteins.

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eCLIP assay for SRM is not avaliable on ENCORE database.

13 proteins are bound to SRM RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	11119995	11120073	-	5'-UTR,CDS,intron-Distal	5.68109	64.32398	HepG2	DDX3X
chr1	11119856	11119948	-	CDS,intron-Distal	4.86005	37.11014	HepG2	DDX3X
chr1	11119329	11119356	-	CDS,intron-Distal	3.38958	26.45062	K562	YBX3
chr1	11116770	11116801	-	3'-UTR,CDS,intron-Distal	4.94724	24.58527	K562	YBX3
chr1	11119356	11119367	-	CDS,intron-Distal	3.53116	22.11094	K562	YBX3
chr1	11120001	11120070	-	5'-UTR,intron-Distal	5.38158	20.22515	K562	DDX3X
chr1	11115097	11115135	-	CDS,intron-Distal	3.96412	20.07395	K562	YBX3
chr1	11119948	11119995	-	CDS,intron-Distal	4.07483	19.37445	HepG2	DDX3X
chr1	11114681	11114742	-	3'-UTR,intron-Distal,intron-Proximal	3.41867	16.48149	K562	YBX3
chr1	11118856	11118920	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.69748	15.61647	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 48 entries

eCLIP assay for SRM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SRM is not available on ENCORE database.
122 RBPs can affect the levels of SRM.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SRM is not available on ENCORE database.

122 RBPs can affect the gene expression of SRM :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SRM	ENSG00000116649.5	462.48990	1565.74120	-1.75940	73.70080	71.10980	HepG2	AUH
SRM	ENSG00000116649.5	632.32910	1797.71810	-1.50740	64.31370	62.14320	HepG2	ETF1
SRM	ENSG00000116649.5	1867.76370	668.64650	1.48190	42.69650	39.58930	K562	EIF3G
SRM	ENSG00000116649.5	1928.42890	998.01230	0.95020	38.97020	37.27130	HepG2	PUM1
SRM	ENSG00000116649.5	7493.43750	4183.06950	0.84100	38.18410	36.04160	K562	DDX47
SRM	ENSG00000116649.5	3462.88810	1733.98100	0.99780	37.14800	35.06670	K562	FXR1
SRM	ENSG00000116649.5	1164.35720	539.48750	1.10980	30.89160	29.25620	HepG2	TRIM56
SRM	ENSG00000116649.5	1049.57560	490.06170	1.09870	29.69230	27.90200	HepG2	SAFB2
SRM	ENSG00000116649.5	2142.55790	1012.46110	1.08140	27.62670	25.62550	K562	PTBP1
SRM	ENSG00000116649.5	2218.45310	1039.82960	1.09310	27.45190	24.52070	K562	MATR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 141 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SRM is not available on ENCORE database.

19 RBPs can affect the splicing of SRM :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SRM	ENSG00000116649.5	chr1	-	11115837	11115983			11115018	11115141	11116067	11116151	-0.06500	0.00000	0.00002	excluded	K562	PRPF8
MXE	SRM	ENSG00000116649.5	chr1	-	11115018	11115141	11115837	11115983	11114645	11114942	11116067	11116151	-0.15800	0.00000	0.00000	2included	K562	XRN2
MXE	SRM	ENSG00000116649.5	chr1	-	11115018	11115141	11115837	11115983	11114645	11114942	11116067	11116151	0.11500	0.00000	0.00132	1included	K562	PUM1
MXE	SRM	ENSG00000116649.5	chr1	-	11115018	11115141	11115837	11115983	11114645	11114942	11116067	11116151	-0.16600	0.00000	0.00015	2included	HepG2	HNRNPU
MXE	SRM	ENSG00000116649.5	chr1	-	11115018	11115141	11115837	11115983	11114645	11114942	11116067	11116151	0.15800	0.00000	0.00010	1included	K562	PPIL4
MXE	SRM	ENSG00000116649.5	chr1	-	11115018	11115141	11115837	11115983	11114645	11114942	11116067	11116151	-0.17700	0.00000	0.00000	2included	K562	PRPF8
SE	SRM	ENSG00000116649.5	chr1	-	11115837	11115993			11114720	11115141	11116067	11116151	-0.11900	0.00001	0.00029	excluded	K562	HNRNPC
MXE	SRM	ENSG00000116649.5	chr1	-	11115018	11115141	11115837	11115983	11114645	11114942	11116067	11116151	0.18000	0.00001	0.00074	1included	HepG2	TAF15
SE	SRM	ENSG00000116649.5	chr1	-	11115837	11115993			11115018	11115141	11116067	11116151	-0.05300	0.00002	0.00046	excluded	K562	AQR
MXE	SRM	ENSG00000116649.5	chr1	-	11115018	11115141	11115837	11115983	11114645	11114942	11116067	11116151	-0.15400	0.00002	0.00114	2included	K562	TARDBP

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SRM

General Information

Functions

Localization

Domains (AlphaFold: SRM)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SRM is not avaliable on ENCORE database.

13 proteins are bound to SRM RNA:

eCLIP assay for SRM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SRM is not available on ENCORE database.

122 RBPs can affect the gene expression of SRM :

The Knockdown/knockout RNA-Seq assay for SRM is not available on ENCORE database.

19 RBPs can affect the splicing of SRM :

The Knockdown/knockout RNA-Seq assay for SRM is not avaliable on ENCORE database.