SNW1

General Information

Gene Name : SNW1
Gene ID : ENSG00000100603.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNW1)

Not Available

Antibody Validation

View validation images for all SNW1 antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNW1	ENSG00000100603.13	87.78	73.88	80.83	ENCSR000AEF
HepG2	SNW1	ENSG00000100603.13	45.94	89.19	67.56	ENCSR985KAT
K562	SNW1	ENSG00000100603.13	60.02	74.63	67.33	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	SNW1-BGKcLV33-K562		SNW1	K562	Released			CRISPR	KD% = band isn't on the position,
knockdown followed by RNA-seq	SNW1-BGKcLV33-K562	ENCSR458FLK	SNW1	K562	Released		ENCSR271ZAB	CRISPR	KD% = no band on the position,

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SNW1	ENCAB440BLE	A300-785A	1			Released, ENCODE4		BGKcLV33-65, Released, ENCODE4
SNW1	ENCAB574RLF	A300-784A	1			Released, ENCODE4		BGKcLV33-65, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SNW1	K562	CRISPR			BGKcLV33-61,BGKcLV33-62	BGKcLV33-1,BGKcLV33-2	band isn't on the position,	Released	ENCODE4
SNW1	K562	CRISPR	ENCSR458FLK	ENCSR271ZAB	SNW1-BGKcLV33-65,SNW1-BGKcLV33-66	NT-BGKcLV33-1,NT-BGKcLV33-2	no band on the position,	Released	ENCODE4
SNW1	HepG2	CRISPR			BGHcLV31-61,BGHcLV31-62	BGHcLV31-1,BGHcLV31-2	0.0,0.0	NotSatisfied	ENCODE4
SNW1	HepG2	CRISPR			BGHcLV34-55,BGHcLV34-56	BGHcLV34-1,BGHcLV34-2	0.0,0.0	NotSatisfied	ENCORE2
SNW1	HepG2	CRISPR			BGHcLV36-31,BGHcLV36-32	BGHcLV36-1,BGHcLV36-2	NO CLEAR BAND ON THE POSITION,	NotSatisfied	ENCORE2
SNW1	HepG2	CRISPR			BGHcLV47-69,BGHcLV47-70	BGHcLV47-1,BGHcLV47-2	0.0,0.0	NotSatisfied	ENCORE2
SNW1	HepG2	CRISPR			BGHcLV49-103,BGHcLV49-104	BGHcLV49-1,BGHcLV49-2	0.0,0.0	NotSatisfied	ENCORE2
SNW1	HepG2	CRISPR			BGHcLV49-105,BGHcLV49-106	BGHcLV49-1,BGHcLV49-2	0.0,0.0	NotSatisfied	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SNW1	Product_ID: A300-784A Lot_ID: 1 Source: Bethyl Labs Target Name: SNW1-human
SNW1	Product_ID: A300-785A Lot_ID: 1 Source: Bethyl Labs Target Name: SNW1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNW1 is not avaliable on ENCORE database.

Proteins bound to RNA

SNW1 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for SNW1 is not avaliable on ENCORE database.

15 proteins are bound to SNW1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	78183959	78184017	-	3'-UTR,intron-Distal,intron-Proximal	4.12620	8.65685	K562	TIA1
chr14	78184060	78184109	-	3'-UTR,intron-Distal,intron-Proximal	4.34214	8.51000	K562	YBX3
chr14	78184109	78184157	-	3'-UTR,intron-Distal,intron-Proximal	3.71810	7.80648	K562	YBX3
chr14	78205131	78205199	-	3'-UTR,CDS,intron-Distal	3.72509	6.97808	HepG2	BCLAF1
chr14	78221347	78221436	-	CDS,intron-Distal	3.26669	6.72164	K562	UCHL5
chr14	78184316	78184397	-	3'-UTR,intron-Distal	5.08434	6.68732	K562	PUM2
chr14	78184201	78184249	-	3'-UTR,intron-Distal,intron-Proximal	3.07161	6.48920	K562	UPF1
chr14	78221317	78221456	-	CDS,intron-Distal,intron-Proximal	3.39719	5.80517	HepG2	GRWD1
chr14	78198739	78198811	-	intron-Distal,intron-Proximal	4.02731	5.63763	K562	AQR
chr14	78184506	78184538	-	3'-UTR,CDS,intron-Distal	3.72954	5.08388	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 18 entries

eCLIP assay for SNW1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNW1 is not available on ENCORE database.
68 RBPs can affect the levels of SNW1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNW1 is not available on ENCORE database.

68 RBPs can affect the gene expression of SNW1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNW1	ENSG00000100603.9	1078.62370	2309.87100	-1.09860	21.84840	19.44470	K562	TARDBP
SNW1	ENSG00000100603.9	945.18600	1885.41930	-0.99620	17.45920	15.90900	HepG2	CPSF6
SNW1	ENSG00000100603.9	5400.45660	3065.72140	0.81680	15.30200	14.06630	K562	PUS1
SNW1	ENSG00000100603.9	1147.47290	1988.08420	-0.79290	12.13370	10.77910	HepG2	TARDBP
SNW1	ENSG00000100603.9	3988.03730	2971.02370	0.42460	10.13520	9.13840	K562	AGGF1
SNW1	ENSG00000100603.9	1864.99060	1312.45070	0.50680	9.99800	8.97250	HepG2	UTP3
SNW1	ENSG00000100603.9	4139.54400	2987.26000	0.47050	9.21520	8.15570	K562	RBM15
SNW1	ENSG00000100603.9	4634.62620	3484.55950	0.41140	9.19770	8.09290	K562	DDX47
SNW1	ENSG00000100603.9	3516.93860	2720.63920	0.37030	8.41410	7.01600	K562	WDR43
SNW1	ENSG00000100603.9	2214.05350	1459.18660	0.60140	7.16690	5.96160	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 72 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNW1 is not available on ENCORE database.

18 RBPs can affect the splicing of SNW1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.16800	0.00000	excluded	K562	SF3B4
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.15700	0.00000	excluded	K562	AKAP8L
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.11600	0.00136	excluded	K562	FMR1
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.22400	0.00000	excluded	K562	AQR
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.21700	0.00000	excluded	K562	PUS1
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.23300	0.00000	excluded	K562	U2AF1
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.15500	0.00000	excluded	K562	UTP18
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.21500	0.00000	excluded	K562	U2AF2
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.16000	0.00000	excluded	K562	RBM15
SE	SNW1	ENSG00000100603.9	chr14	-	78189523	78189620	78187053	78187171	78197330	78197472	-0.15000	0.00000	excluded	K562	AGGF1

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNW1

General Information

Functions

Localization

Domains (AlphaFold: SNW1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNW1 is not avaliable on ENCORE database.

15 proteins are bound to SNW1 RNA:

eCLIP assay for SNW1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNW1 is not available on ENCORE database.

68 RBPs can affect the gene expression of SNW1 :

The Knockdown/knockout RNA-Seq assay for SNW1 is not available on ENCORE database.

18 RBPs can affect the splicing of SNW1 :

The Knockdown/knockout RNA-Seq assay for SNW1 is not avaliable on ENCORE database.