PQBP1

General Information

Gene Name : PQBP1
Gene ID : ENSG00000102103.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PQBP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PQBP1	ENSG00000102103.15	25.00	47.66	36.33	ENCSR000AEF
HepG2	PQBP1	ENSG00000102103.15	108.78	61.48	85.13	ENCSR985KAT
K562	PQBP1	ENSG00000102103.15	164.92	152.68	158.80	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PQBP1 is not avaliable on ENCORE database.

Proteins bound to RNA

PQBP1 RNA is bound by 6 proteins.

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eCLIP assay for PQBP1 is not avaliable on ENCORE database.

6 proteins are bound to PQBP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	48760278	48760356	+	CDS	5.66254	8.52455	K562	PABPC4
chrX	48758506	48758557	+	CDS	4.55195	8.13934	K562	RPS3
chrX	48758593	48758681	+	intron-Distal,intron-Proximal	5.48456	6.83960	K562	AQR
chrX	48758563	48758615	+	CDS,intron-Proximal	3.99651	4.45914	HepG2	PRPF8
chrX	48759651	48759779	+	CDS,intron-Distal,intron-Proximal	3.69252	4.22242	HepG2	G3BP1
chrX	48759569	48759644	+	CDS,intron-Distal	3.12958	4.00731	K562	UCHL5
chrX	48760356	48760407	+	3'-UTR,CDS	4.08609	3.83987	K562	PABPC4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 7 of 7 entries

eCLIP assay for PQBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PQBP1 is not available on ENCORE database.
82 RBPs can affect the levels of PQBP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PQBP1 is not available on ENCORE database.

82 RBPs can affect the gene expression of PQBP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PQBP1	ENSG00000102103.11	470.08600	953.47130	-1.02030	23.57660	22.25880	HepG2	SRSF9
PQBP1	ENSG00000102103.11	1221.86790	603.01330	1.01870	21.49900	19.23340	K562	EIF3G
PQBP1	ENSG00000102103.11	667.15770	1171.99190	-0.81290	16.82560	15.86860	HepG2	SRSF1
PQBP1	ENSG00000102103.11	635.27100	1122.83780	-0.82170	16.31320	15.05900	HepG2	SF3B4
PQBP1	ENSG00000102103.11	694.19430	1200.23430	-0.78990	15.62330	14.53470	HepG2	NELFE
PQBP1	ENSG00000102103.11	646.36250	1168.02420	-0.85370	15.26720	13.96820	HepG2	QKI
PQBP1	ENSG00000102103.11	1360.22070	2071.77920	-0.60700	14.94730	13.43390	K562	UPF1
PQBP1	ENSG00000102103.11	156.99290	513.29890	-1.70910	14.44940	12.54780	K562	G3BP2
PQBP1	ENSG00000102103.11	1349.08420	857.33640	0.65390	13.49150	12.53040	HepG2	SSB
PQBP1	ENSG00000102103.11	727.29090	407.70560	0.83490	11.23430	10.34600	HepG2	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 93 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PQBP1 is not available on ENCORE database.

49 RBPs can affect the splicing of PQBP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.24500	0.00000	excluded	K562	SRSF1
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.15400	0.00000	excluded	K562	PRPF8
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.13600	0.00002	excluded	HepG2	U2AF1
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.07100	0.00101	excluded	K562	METAP2
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.23200	0.00000	excluded	K562	AQR
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.08500	0.00163	excluded	K562	BUD13
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.12000	0.00004	excluded	K562	EFTUD2
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.10100	0.00026	excluded	HepG2	SRSF1
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.11400	0.00009	excluded	HepG2	SF3B4
SE	PQBP1	ENSG00000102103.11	chrX	+	48759509	48759794	48759206	48759319	48760008	48760072	-0.12500	0.00002	excluded	K562	RBM22

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PQBP1

General Information

Functions

Localization

Domains (AlphaFold: PQBP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PQBP1 is not avaliable on ENCORE database.

6 proteins are bound to PQBP1 RNA:

eCLIP assay for PQBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PQBP1 is not available on ENCORE database.

82 RBPs can affect the gene expression of PQBP1 :

The Knockdown/knockout RNA-Seq assay for PQBP1 is not available on ENCORE database.

49 RBPs can affect the splicing of PQBP1 :

The Knockdown/knockout RNA-Seq assay for PQBP1 is not avaliable on ENCORE database.