OGFOD3

General Information

Gene Name : OGFOD3
Gene ID : ENSG00000181396.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: OGFOD3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	OGFOD3	ENSG00000181396.12	2.62	6.91	4.77	ENCSR000AEF
HepG2	OGFOD3	ENSG00000181396.12	47.19	20.01	33.60	ENCSR985KAT
K562	OGFOD3	ENSG00000181396.12	16.81	12.34	14.57	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for OGFOD3 is not avaliable on ENCORE database.

Proteins bound to RNA

OGFOD3 RNA is bound by 17 proteins.

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eCLIP assay for OGFOD3 is not avaliable on ENCORE database.

17 proteins are bound to OGFOD3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	80376351	80376463	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.10527	30.61394	HepG2	DDX3X
chr17	80373404	80373501	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.84194	22.70472	HepG2	DDX3X
chr17	80373324	80373404	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.42398	21.40587	HepG2	DDX3X
chr17	80349123	80349218	-	3'-UTR,intron-Distal	6.21806	20.22720	HepG2	UPF1
chr17	80370341	80370519	-	intron-Distal	6.05187	16.75245	HepG2	HNRNPK
chr17	80370369	80370479	-	intron-Distal	6.52041	14.92586	HepG2	DDX59
chr17	80355178	80355280	-	intron-Distal	5.65325	13.90560	HepG2	HNRNPK
chr17	80348952	80349052	-	3'-UTR,intron-Distal	4.59361	13.89495	HepG2	UPF1
chr17	80350015	80350106	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	5.78240	13.62665	HepG2	UPF1
chr17	80376286	80376351	-	5'-UTR,CDS,intron-Distal	5.00895	13.15062	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 44 entries

eCLIP assay for OGFOD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for OGFOD3 is not available on ENCORE database.
65 RBPs can affect the levels of OGFOD3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for OGFOD3 is not available on ENCORE database.

65 RBPs can affect the gene expression of OGFOD3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
OGFOD3	ENSG00000181396.8	906.19020	495.04750	0.87210	17.48130	16.22400	HepG2	TRIM56
OGFOD3	ENSG00000181396.8	733.21750	1220.70060	-0.73540	13.06410	12.10570	HepG2	RBM22
OGFOD3	ENSG00000181396.8	213.27700	459.49720	-1.10730	12.82550	11.16530	K562	POLR2G
OGFOD3	ENSG00000181396.8	271.62470	599.06780	-1.14110	12.17310	10.43470	K562	PCBP3
OGFOD3	ENSG00000181396.8	959.09980	1378.70660	-0.52360	9.41580	8.64190	HepG2	SRFBP1
OGFOD3	ENSG00000181396.8	718.71290	1094.24200	-0.60640	9.33720	8.58360	HepG2	SRSF1
OGFOD3	ENSG00000181396.8	729.91830	450.37600	0.69650	9.24130	7.93830	HepG2	PPIL4
OGFOD3	ENSG00000181396.8	658.76120	983.64390	-0.57840	7.45870	6.61310	HepG2	TAF15
OGFOD3	ENSG00000181396.8	1151.74000	864.76790	0.41330	7.06190	6.20350	HepG2	PUM1
OGFOD3	ENSG00000181396.8	530.42490	318.07170	0.73770	7.11200	5.70050	K562	TIA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 67 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for OGFOD3 is not available on ENCORE database.

11 RBPs can affect the splicing of OGFOD3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	OGFOD3	ENSG00000181396.8	chr17	-	80352206	80352419			80350316	80350410	80356071	80356195	-0.31100	0.00000	0.00028	excluded	HepG2	RBM22
SE	OGFOD3	ENSG00000181396.8	chr17	-	80352206	80352419			80349885	80350410	80356071	80356195	-0.31900	0.00000	0.00052	excluded	HepG2	XRCC6
SE	OGFOD3	ENSG00000181396.8	chr17	-	80352206	80352419			80350316	80350410	80356071	80356195	-0.28400	0.00008	0.01047	excluded	HepG2	IGF2BP3
MXE	OGFOD3	ENSG00000181396.8	chr17	-	80364293	80364358	80373273	80373503	80363199	80363256	80376287	80376513	0.13900	0.00009	0.00456	1included	K562	HNRNPUL1
SE	OGFOD3	ENSG00000181396.8	chr17	-	80352206	80352419			80349885	80350410	80356071	80356195	0.39500	0.00016	0.00298	included	HepG2	U2AF2
MXE	OGFOD3	ENSG00000181396.8	chr17	-	80364293	80364358	80367243	80367286	80363199	80363256	80369330	80369406	-0.10000	0.00027	0.02227	2included	HepG2	LARP4
SE	OGFOD3	ENSG00000181396.8	chr17	-	80352206	80352419			80350316	80350410	80356071	80356195	0.26500	0.00028	0.06918	included	K562	WDR43
MXE	OGFOD3	ENSG00000181396.8	chr17	-	80364293	80364358	80373273	80373503	80363199	80363256	80376287	80376513	0.14500	0.00053	0.02535	1included	K562	AKAP8L
MXE	OGFOD3	ENSG00000181396.8	chr17	-	80364293	80364358	80369330	80369406	80363199	80363256	80373273	80373503	-0.26500	0.00070	0.04415	2included	K562	LARP7
SE	OGFOD3	ENSG00000181396.8	chr17	-	80352206	80352419			80349885	80350410	80356071	80356195	-0.21300	0.00090	0.02326	excluded	HepG2	SRSF1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

OGFOD3

General Information

Functions

Localization

Domains (AlphaFold: OGFOD3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for OGFOD3 is not avaliable on ENCORE database.

17 proteins are bound to OGFOD3 RNA:

eCLIP assay for OGFOD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for OGFOD3 is not available on ENCORE database.

65 RBPs can affect the gene expression of OGFOD3 :

The Knockdown/knockout RNA-Seq assay for OGFOD3 is not available on ENCORE database.

11 RBPs can affect the splicing of OGFOD3 :

The Knockdown/knockout RNA-Seq assay for OGFOD3 is not avaliable on ENCORE database.