NDUFS1

General Information

Gene Name : NDUFS1
Gene ID : ENSG00000023228.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NDUFS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NDUFS1	ENSG00000023228.13	66.75	73.66	70.20	ENCSR000AEF
HepG2	NDUFS1	ENSG00000023228.13	90.85	117.16	104.00	ENCSR985KAT
K562	NDUFS1	ENSG00000023228.13	72.11	68.69	70.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NDUFS1 is not avaliable on ENCORE database.

Proteins bound to RNA

NDUFS1 RNA is bound by 29 proteins.

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eCLIP assay for NDUFS1 is not avaliable on ENCORE database.

29 proteins are bound to NDUFS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	206987481	206987609	-	3'-UTR,intron-Distal	4.92939	38.69065	HepG2	UPF1
chr2	207012295	207012361	-	CDS,intron-Distal	4.05344	26.65785	HepG2	BCLAF1
chr2	206991473	206991534	-	CDS,intron-Distal	5.09495	24.24119	K562	LIN28B
chr2	207017116	207017202	-	CDS,intron-Distal,intron-Proximal	5.21382	23.46466	HepG2	PRPF8
chr2	207012253	207012295	-	CDS,intron-Distal,intron-Proximal	3.55611	18.16355	HepG2	BCLAF1
chr2	206987698	206987767	-	3'-UTR,intron-Distal	3.95851	17.98443	HepG2	UPF1
chr2	207013747	207013821	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.10375	17.28671	HepG2	BCLAF1
chr2	207012254	207012364	-	CDS,intron-Distal,intron-Proximal	4.21870	14.70799	HepG2	G3BP1
chr2	206987487	206987571	-	3'-UTR,intron-Distal	6.07722	14.48846	K562	UPF1
chr2	207013745	207013819	-	3'-UTR,CDS,intron-Distal	4.40816	14.12387	HepG2	G3BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 93 entries

eCLIP assay for NDUFS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NDUFS1 is not available on ENCORE database.
94 RBPs can affect the levels of NDUFS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NDUFS1 is not available on ENCORE database.

94 RBPs can affect the gene expression of NDUFS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NDUFS1	ENSG00000023228.9	3301.91270	5898.87330	-0.83710	30.09900	28.75410	HepG2	RBM22
NDUFS1	ENSG00000023228.9	2005.38410	3227.55990	-0.68660	22.45400	20.65160	K562	UPF1
NDUFS1	ENSG00000023228.9	3164.56930	4599.17780	-0.53940	21.76410	20.58820	HepG2	ZNF622
NDUFS1	ENSG00000023228.9	2186.29360	4305.04370	-0.97750	22.02530	20.54830	K562	AQR
NDUFS1	ENSG00000023228.9	2640.50470	4037.36210	-0.61260	20.11210	18.71960	HepG2	UTP3
NDUFS1	ENSG00000023228.9	2197.51510	3271.94550	-0.57430	20.15810	18.55050	HepG2	DNAJC2
NDUFS1	ENSG00000023228.9	3299.62680	5441.55830	-0.72170	19.14870	17.25530	HepG2	NOL12
NDUFS1	ENSG00000023228.9	2430.38310	3682.70870	-0.59960	18.28220	16.82670	HepG2	HNRNPU
NDUFS1	ENSG00000023228.9	3810.16720	5572.25120	-0.54840	17.25320	15.94540	HepG2	PCBP1
NDUFS1	ENSG00000023228.9	2291.52250	4056.99920	-0.82410	16.61420	14.71960	K562	GRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NDUFS1 is not available on ENCORE database.

14 RBPs can affect the splicing of NDUFS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NDUFS1	ENSG00000023228.9	chr2	-	207017142	207017234			207014541	207014649	207024064	207024327	-0.14300	0.00000	0.00006	excluded	K562	PUS1
SE	NDUFS1	ENSG00000023228.9	chr2	-	207017142	207017234			207014541	207014649	207018341	207018406	-0.17900	0.00000	0.00000	excluded	HepG2	SRSF1
A3SS	NDUFS1	ENSG00000023228.9	chr2	-	206988824	206989062			206988824	206989000	206991262	206991335	0.05200	0.00000	0.00000	longer	K562	AQR
A3SS	NDUFS1	ENSG00000023228.9	chr2	-	207007409	207007589			207007409	207007555	207008741	207008856	0.08200	0.00000	0.00000	longer	K562	AQR
MXE	NDUFS1	ENSG00000023228.9	chr2	-	207014541	207014649	207017142	207017234	207013743	207013820	207018341	207018406	-0.13500	0.00000	0.00069	2included	K562	LARP4
SE	NDUFS1	ENSG00000023228.9	chr2	-	207017142	207017234			207014541	207014649	207018341	207018406	0.05500	0.00001	0.00274	included	HepG2	RBFOX2
SE	NDUFS1	ENSG00000023228.9	chr2	-	207017142	207017234			207014541	207014649	207018341	207018406	0.08200	0.00001	0.00134	included	HepG2	SUPV3L1
SE	NDUFS1	ENSG00000023228.9	chr2	-	207017142	207017234			207014541	207014649	207018341	207018406	0.07300	0.00006	0.01980	included	HepG2	DDX55
SE	NDUFS1	ENSG00000023228.9	chr2	-	207017142	207017234			207014541	207014649	207018341	207018406	0.07400	0.00019	0.05607	included	HepG2	BCLAF1
SE	NDUFS1	ENSG00000023228.9	chr2	-	207017142	207017234			207014541	207014649	207018341	207018406	-0.07500	0.00027	0.00724	excluded	K562	SRSF1

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NDUFS1

General Information

Functions

Localization

Domains (AlphaFold: NDUFS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NDUFS1 is not avaliable on ENCORE database.

29 proteins are bound to NDUFS1 RNA:

eCLIP assay for NDUFS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NDUFS1 is not available on ENCORE database.

94 RBPs can affect the gene expression of NDUFS1 :

The Knockdown/knockout RNA-Seq assay for NDUFS1 is not available on ENCORE database.

14 RBPs can affect the splicing of NDUFS1 :

The Knockdown/knockout RNA-Seq assay for NDUFS1 is not avaliable on ENCORE database.