GYPB

General Information

Gene Name : GYPB
Gene ID : ENSG00000250361.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GYPB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GYPB	ENSG00000250361.8	0.00	0.00	0.00	ENCSR000AEF
HepG2	GYPB	ENSG00000250361.8	0.00	0.00	0.00	ENCSR985KAT
K562	GYPB	ENSG00000250361.8	68.58	70.95	69.77	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GYPB is not avaliable on ENCORE database.

Proteins bound to RNA

GYPB RNA is bound by 14 proteins.

CanvasJS.com

eCLIP assay for GYPB is not avaliable on ENCORE database.

14 proteins are bound to GYPB RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	145032392	145032469	-	3'-UTR,intron-Distal,intron-Proximal	3.64931	40.00590	K562	PUM2
chr4	144917290	144917383	-	3'-UTR,intron-Distal,intron-Proximal	4.83163	29.96162	K562	PCBP1
chr4	145038031	145038081	-	3'-UTR,CDS,intron-Distal	5.54327	27.28427	K562	SND1
chr4	145032158	145032208	-	3'-UTR,intron-Distal,intron-Proximal	3.37135	22.32358	K562	PUM2
chr4	145032241	145032332	-	3'-UTR,intron-Distal	4.66292	16.24647	HepG2	SUB1
chr4	145031918	145031950	-	3'-UTR,intron-Distal	4.37582	15.60617	K562	HNRNPL
chr4	145039877	145039906	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.71355	14.10373	K562	SND1
chr4	145038004	145038031	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.29396	13.17173	K562	SND1
chr4	145032331	145032454	-	3'-UTR,intron-Distal,intron-Proximal	4.94908	12.27606	K562	IGF2BP1
chr4	145031883	145031918	-	3'-UTR,intron-Distal	4.05882	12.06403	K562	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for GYPB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GYPB is not available on ENCORE database.
114 RBPs can affect the levels of GYPB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GYPB is not available on ENCORE database.

114 RBPs can affect the gene expression of GYPB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GYPB	ENSG00000250361.2	1855.38000	544.76410	1.76790	95.72050	92.55860	K562	WDR43
GYPB	ENSG00000250361.2	1854.98580	583.68200	1.66810	85.73140	82.44380	K562	SRPK2
GYPB	ENSG00000250361.2	3378.02300	841.09680	2.00570	85.33540	81.50750	K562	GRSF1
GYPB	ENSG00000250361.2	1505.05630	577.45110	1.38190	60.35230	57.63450	K562	NSUN2
GYPB	ENSG00000250361.2	3709.82680	1195.13450	1.63410	57.88450	54.53590	K562	CELF1
GYPB	ENSG00000250361.2	1837.67570	519.66860	1.82210	37.37520	35.02730	K562	MTPAP
GYPB	ENSG00000250361.2	2270.93470	838.15070	1.43790	36.00870	34.10210	K562	AQR
GYPB	ENSG00000250361.2	1228.77440	494.28670	1.31370	35.57680	32.38830	K562	GLRX3
GYPB	ENSG00000250361.2	1321.80360	569.71860	1.21410	33.66710	31.22390	K562	SF3A3
GYPB	ENSG00000250361.2	2570.74520	1035.88620	1.31120	31.79030	28.57250	K562	MSI2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 114 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GYPB is not available on ENCORE database.

19 RBPs can affect the splicing of GYPB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GYPB	ENSG00000250361.2	chr4	-	144921535	144921628	144920563	144920602	144922337	144922436	-0.27700	0.00000	0.00018	excluded	K562	DROSHA
SE	GYPB	ENSG00000250361.2	chr4	-	144922337	144922436	144920563	144920602	144940403	144940455	0.42700	0.00000	0.00253	included	K562	PUM2
SE	GYPB	ENSG00000250361.2	chr4	-	144922337	144922436	144920563	144920602	144940403	144940455	0.43600	0.00000	0.00108	included	K562	EIF4G2
SE	GYPB	ENSG00000250361.2	chr4	-	144921535	144921628	144920563	144920602	144922337	144922436	-0.34800	0.00000	0.00003	excluded	K562	UPF1
SE	GYPB	ENSG00000250361.2	chr4	-	144921535	144921628	144920563	144920602	144922337	144922436	-0.25200	0.00000	0.00012	excluded	K562	CPSF6
SE	GYPB	ENSG00000250361.2	chr4	-	144922337	144922436	144920563	144920602	144940403	144940490	-0.34900	0.00000	0.00039	excluded	K562	ZC3H8
SE	GYPB	ENSG00000250361.2	chr4	-	144921535	144921628	144920563	144920602	144922337	144922436	-0.27700	0.00001	0.00419	excluded	K562	EIF4G2
SE	GYPB	ENSG00000250361.2	chr4	-	144921535	144921628	144920563	144920602	144922337	144922436	0.13900	0.00001	0.00093	included	K562	HNRNPU
SE	GYPB	ENSG00000250361.2	chr4	-	144918692	144918787	144917349	144917457	144920563	144920602	-0.08400	0.00002	0.01368	excluded	K562	PPIL4
SE	GYPB	ENSG00000250361.2	chr4	-	144920563	144920602	144918491	144918787	144940403	144940477	-0.08400	0.00002	0.00983	excluded	K562	SBDS

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GYPB

General Information

Functions

Localization

Domains (AlphaFold: GYPB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GYPB is not avaliable on ENCORE database.

14 proteins are bound to GYPB RNA:

eCLIP assay for GYPB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GYPB is not available on ENCORE database.

114 RBPs can affect the gene expression of GYPB :

The Knockdown/knockout RNA-Seq assay for GYPB is not available on ENCORE database.

19 RBPs can affect the splicing of GYPB :

The Knockdown/knockout RNA-Seq assay for GYPB is not avaliable on ENCORE database.