GPS1

General Information

Gene Name : GPS1
Gene ID : ENSG00000169727.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GPS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GPS1	ENSG00000169727.12	4.74	22.34	13.54	ENCSR000AEF
HepG2	GPS1	ENSG00000169727.12	155.54	41.33	98.44	ENCSR985KAT
K562	GPS1	ENSG00000169727.12	79.92	50.12	65.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GPS1 is not avaliable on ENCORE database.

Proteins bound to RNA

GPS1 RNA is bound by 32 proteins.

CanvasJS.com

eCLIP assay for GPS1 is not avaliable on ENCORE database.

32 proteins are bound to GPS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	80009811	80009896	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.79352	28.05569	HepG2	PRPF8
chr17	80015163	80015268	+	3'-UTR	6.70640	21.61956	HepG2	UPF1
chr17	80011078	80011143	+	CDS,intron-Proximal	4.62062	20.29114	HepG2	SF3B4
chr17	80011742	80011798	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.42226	19.07695	HepG2	PPIG
chr17	80015014	80015163	+	3'-UTR	4.52142	18.53359	HepG2	UPF1
chr17	80011795	80011865	+	3'-UTR,5'-UTR,CDS	5.07587	16.98581	HepG2	GRWD1
chr17	80012775	80012787	+	3'-UTR,CDS	3.73416	16.90039	K562	YBX3
chr17	80011798	80011863	+	3'-UTR,5'-UTR,CDS	3.59157	16.36210	HepG2	PPIG
chr17	80012650	80012683	+	3'-UTR,5'-UTR,CDS	3.89611	16.17232	K562	YBX3
chr17	80010965	80011073	+	intron-Distal,intron-Proximal	5.18350	15.23846	HepG2	PRPF4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 109 entries

eCLIP assay for GPS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GPS1 is not available on ENCORE database.
99 RBPs can affect the levels of GPS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GPS1 is not available on ENCORE database.

99 RBPs can affect the gene expression of GPS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GPS1	ENSG00000169727.8	1539.67120	2866.46580	-0.89670	37.59120	36.29790	HepG2	SRFBP1
GPS1	ENSG00000169727.8	3009.39120	1464.03270	1.03940	26.08500	24.50690	HepG2	PUF60
GPS1	ENSG00000169727.8	2668.68540	1643.97480	0.69880	24.95970	23.39940	HepG2	SUCLG1
GPS1	ENSG00000169727.8	1669.14030	969.40330	0.78380	24.80340	23.18750	HepG2	SMN1
GPS1	ENSG00000169727.8	1467.44770	831.27620	0.81980	22.57710	20.98360	HepG2	SAFB2
GPS1	ENSG00000169727.8	72.61690	293.36170	-2.01430	18.26410	16.00520	K562	G3BP2
GPS1	ENSG00000169727.8	859.15370	432.44700	0.99030	16.60370	14.58160	K562	EIF3G
GPS1	ENSG00000169727.8	1468.91430	832.56270	0.81900	16.07090	14.38520	HepG2	PPIL4
GPS1	ENSG00000169727.8	1310.73400	1963.87820	-0.58330	13.67250	12.61130	HepG2	SRSF9
GPS1	ENSG00000169727.8	1274.13430	829.38760	0.61930	13.68810	12.35070	HepG2	DNAJC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GPS1 is not available on ENCORE database.

39 RBPs can affect the splicing of GPS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	GPS1	ENSG00000169727.8	chr17	+	80010131	80010335	80009375	80009400	80011149	80011242	0.41900	0.00017	included	HepG2	PTBP1
SE	GPS1	ENSG00000169727.8	chr17	+	80010131	80010335	80009375	80009400	80011149	80011242	0.35400	0.00014	included	HepG2	MATR3
SE	GPS1	ENSG00000169727.8	chr17	+	80010134	80010335	80009772	80009840	80011149	80011242	0.14600	0.00037	included	HepG2	TIAL1
SE	GPS1	ENSG00000169727.8	chr17	+	80010131	80010335	80009772	80009840	80011149	80011242	0.10400	0.00202	included	HepG2	XRN2
SE	GPS1	ENSG00000169727.8	chr17	+	80010131	80010335	80009772	80009840	80011149	80011242	0.10200	0.00026	included	HepG2	HNRNPC
SE	GPS1	ENSG00000169727.8	chr17	+	80010250	80010335	80009800	80009840	80011149	80011242	0.10900	0.00128	included	K562	SAFB
A3SS	GPS1	ENSG00000169727.8	chr17	+	80013861	80013971	80013876	80013971	80013615	80013701	0.07700	0.00000	longer	K562	AQR
RI	GPS1	ENSG00000169727.8	chr17	+	80014715	80015346	80014715	80014850	80014928	80015346	-0.05800	0.00039	excluded	K562	DROSHA
RI	GPS1	ENSG00000169727.8	chr17	+	80014161	80014426	80014161	80014267	80014345	80014426	0.12000	0.00000	included	K562	PUS1
RI	GPS1	ENSG00000169727.8	chr17	+	80014504	80015346	80014504	80014642	80014715	80015346	0.07200	0.00000	included	HepG2	PRPF8

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GPS1

General Information

Functions

Localization

Domains (AlphaFold: GPS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GPS1 is not avaliable on ENCORE database.

32 proteins are bound to GPS1 RNA:

eCLIP assay for GPS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GPS1 is not available on ENCORE database.

99 RBPs can affect the gene expression of GPS1 :

The Knockdown/knockout RNA-Seq assay for GPS1 is not available on ENCORE database.

39 RBPs can affect the splicing of GPS1 :

The Knockdown/knockout RNA-Seq assay for GPS1 is not avaliable on ENCORE database.