GIT1

General Information

Gene Name : GIT1
Gene ID : ENSG00000108262.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GIT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GIT1	ENSG00000108262.15	12.62	22.08	17.35	ENCSR000AEF
HepG2	GIT1	ENSG00000108262.15	25.10	14.06	19.58	ENCSR985KAT
K562	GIT1	ENSG00000108262.15	22.54	20.09	21.31	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GIT1 is not avaliable on ENCORE database.

Proteins bound to RNA

GIT1 RNA is bound by 9 proteins.

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eCLIP assay for GIT1 is not avaliable on ENCORE database.

9 proteins are bound to GIT1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	27901238	27901338	-	3'-UTR,intron-Distal	5.82626	32.87545	K562	PUM2
chr17	27901442	27901494	-	3'-UTR,intron-Distal,intron-Proximal	5.27082	20.03557	K562	PUM2
chr17	27916491	27916585	-	5'-UTR,intron-Distal,intron-Proximal	5.21968	11.35209	HepG2	DDX3X
chr17	27900499	27900586	-	3'-UTR,intron-Distal	5.29805	10.24308	K562	PUM2
chr17	27908299	27908375	-	CDS,intron-Distal,intron-Proximal	3.53972	7.29769	HepG2	PRPF8
chr17	27903656	27903743	-	CDS,intron-Distal,intron-Proximal	4.71855	6.92814	HepG2	SF3B4
chr17	27904563	27904664	-	CDS,intron-Distal,intron-Proximal	4.42273	6.79646	HepG2	PRPF8
chr17	27916399	27916473	-	5'-UTR,intron-Distal,intron-Proximal	3.46504	6.48236	HepG2	DDX3X
chr17	27904583	27904663	-	intron-Distal,intron-Proximal	4.13850	5.97994	K562	AQR
chr17	27901574	27901631	-	3'-UTR,intron-Distal	5.01675	4.92687	K562	PCBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for GIT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GIT1 is not available on ENCORE database.
90 RBPs can affect the levels of GIT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GIT1 is not available on ENCORE database.

90 RBPs can affect the gene expression of GIT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GIT1	ENSG00000108262.11	293.86270	1014.92750	-1.78820	51.53090	49.50480	HepG2	TAF15
GIT1	ENSG00000108262.11	1309.90300	586.96150	1.15800	23.55340	22.04060	HepG2	RPS19
GIT1	ENSG00000108262.11	1271.78940	723.33880	0.81400	22.14770	20.79970	HepG2	PUM1
GIT1	ENSG00000108262.11	820.08240	331.36590	1.30720	17.58850	15.49030	K562	TARDBP
GIT1	ENSG00000108262.11	867.87950	499.13790	0.79800	15.00090	13.68290	HepG2	SAFB2
GIT1	ENSG00000108262.11	694.14800	334.02700	1.05520	15.12150	13.63500	K562	PTBP1
GIT1	ENSG00000108262.11	1135.05980	669.48770	0.76150	14.19550	12.96190	HepG2	CELF1
GIT1	ENSG00000108262.11	679.95480	1129.07850	-0.73160	13.37280	12.50030	HepG2	SRSF1
GIT1	ENSG00000108262.11	387.01290	961.42140	-1.31280	12.98590	11.30860	HepG2	SNRNP70
GIT1	ENSG00000108262.11	945.63750	544.60750	0.79600	11.84490	10.93740	HepG2	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 96 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GIT1 is not available on ENCORE database.

9 RBPs can affect the splicing of GIT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GIT1	ENSG00000108262.11	chr17	-	27905979	27906006	27905748	27905797	27908355	27908497	0.11800	0.00026	0.01460	included	HepG2	MATR3
RI	GIT1	ENSG00000108262.11	chr17	-	27902305	27902721	27902305	27902488	27902647	27902721	0.14900	0.00029	0.02422	included	HepG2	SUPV3L1
RI	GIT1	ENSG00000108262.11	chr17	-	27902305	27902721	27902305	27902488	27902647	27902721	0.13600	0.00031	0.01747	included	HepG2	XRN2
SE	GIT1	ENSG00000108262.11	chr17	-	27905979	27906006	27905748	27905797	27908355	27908497	0.10900	0.00061	0.04049	included	HepG2	AKAP1
SE	GIT1	ENSG00000108262.11	chr17	-	27905979	27906006	27905748	27905797	27908355	27908497	0.38700	0.00103	0.02318	included	K562	U2AF1
SE	GIT1	ENSG00000108262.11	chr17	-	27905979	27906006	27905748	27905797	27908355	27908398	-0.11000	0.00228	0.07339	excluded	K562	FXR1
RI	GIT1	ENSG00000108262.11	chr17	-	27902305	27902721	27902305	27902488	27902647	27902721	0.13500	0.00235	0.02468	included	K562	EFTUD2
A3SS	GIT1	ENSG00000108262.11	chr17	-	27904177	27904311	27904177	27904265	27904662	27904760	0.05900	0.00390	0.02324	longer	K562	AQR
RI	GIT1	ENSG00000108262.11	chr17	-	27902305	27902721	27902305	27902488	27902647	27902721	0.17000	0.00687	0.06929	included	K562	PRPF8
A3SS	GIT1	ENSG00000108262.11	chr17	-	27905748	27905839	27905748	27905797	27908355	27908399	0.09700	0.00989	0.05239	longer	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GIT1

General Information

Functions

Localization

Domains (AlphaFold: GIT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GIT1 is not avaliable on ENCORE database.

9 proteins are bound to GIT1 RNA:

eCLIP assay for GIT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GIT1 is not available on ENCORE database.

90 RBPs can affect the gene expression of GIT1 :

The Knockdown/knockout RNA-Seq assay for GIT1 is not available on ENCORE database.

9 RBPs can affect the splicing of GIT1 :

The Knockdown/knockout RNA-Seq assay for GIT1 is not avaliable on ENCORE database.