CSNK1D

General Information

Gene Name : CSNK1D
Gene ID : ENSG00000141551.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CSNK1D)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CSNK1D	ENSG00000141551.14	45.76	71.45	58.61	ENCSR000AEF
HepG2	CSNK1D	ENSG00000141551.14	169.59	139.81	154.70	ENCSR985KAT
K562	CSNK1D	ENSG00000141551.14	88.61	89.47	89.04	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CSNK1D is not avaliable on ENCORE database.

Proteins bound to RNA

CSNK1D RNA is bound by 67 proteins.

CanvasJS.com

eCLIP assay for CSNK1D is not avaliable on ENCORE database.

67 proteins are bound to CSNK1D RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	80202026	80202100	-	3'-UTR,intron-Distal,intron-Proximal	7.09586	400.00000	K562	UPF1
chr17	80201961	80202026	-	3'-UTR,intron-Distal	6.88802	400.00000	K562	UPF1
chr17	80230702	80230784	-	intron-Distal	6.56646	400.00000	HepG2	FAM120A
chr17	80218116	80218195	-	intron-Distal	7.76334	190.52257	K562	AGGF1
chr17	80218761	80218845	-	intron-Distal	7.41282	109.98040	K562	AGGF1
chr17	80218674	80218711	-	intron-Distal	7.94662	101.82661	K562	AGGF1
chr17	80218473	80218519	-	intron-Distal	7.58309	98.53057	K562	AGGF1
chr17	80218658	80218674	-	intron-Distal	8.85846	90.46537	K562	AGGF1
chr17	80218639	80218658	-	intron-Distal	7.09821	74.84424	K562	AGGF1
chr17	80230697	80230769	-	intron-Distal	6.83859	69.75374	K562	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 468 entries

eCLIP assay for CSNK1D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CSNK1D is not available on ENCORE database.
76 RBPs can affect the levels of CSNK1D.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CSNK1D is not available on ENCORE database.

76 RBPs can affect the gene expression of CSNK1D :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CSNK1D	ENSG00000141551.10	5762.28840	4034.57690	0.51410	21.68280	20.50880	HepG2	ZNF622
CSNK1D	ENSG00000141551.10	4644.10880	2401.89820	0.95110	21.41430	19.99240	HepG2	BOP1
CSNK1D	ENSG00000141551.10	10054.52990	4136.49230	1.28130	20.71600	18.81480	HepG2	SF3A3
CSNK1D	ENSG00000141551.10	6779.34360	3576.74920	0.92240	19.20830	17.50200	HepG2	U2AF1
CSNK1D	ENSG00000141551.10	6183.06270	4053.55740	0.60900	17.14890	16.08310	HepG2	RBM22
CSNK1D	ENSG00000141551.10	6423.22270	4578.32320	0.48840	16.19770	15.24920	HepG2	SRFBP1
CSNK1D	ENSG00000141551.10	2058.24880	1224.58140	0.74900	16.25740	14.25850	K562	EIF3G
CSNK1D	ENSG00000141551.10	6682.01020	4849.84040	0.46220	11.91100	10.80430	HepG2	ETF1
CSNK1D	ENSG00000141551.10	5702.33550	3914.69800	0.54260	11.02520	9.73520	HepG2	PUM2
CSNK1D	ENSG00000141551.10	6044.55170	3933.30480	0.61980	10.48860	9.45570	K562	AQR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 83 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CSNK1D is not available on ENCORE database.

43 RBPs can affect the splicing of CSNK1D :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CSNK1D	ENSG00000141551.10	chr17	-	80207573	80208055	80207306	80207478	80209254	80209425	0.22500	0.00000	included	HepG2	G3BP1
SE	CSNK1D	ENSG00000141551.10	chr17	-	80207573	80208055	80207306	80207478	80209254	80209290	-0.08600	0.00002	excluded	HepG2	RBM22
SE	CSNK1D	ENSG00000141551.10	chr17	-	80203851	80203915	80202269	80202707	80206750	80207372	-0.22800	0.00000	excluded	HepG2	U2AF1
SE	CSNK1D	ENSG00000141551.10	chr17	-	80203851	80203915	80202269	80202707	80206750	80207372	-0.25000	0.00000	excluded	K562	AKAP8L
SE	CSNK1D	ENSG00000141551.10	chr17	-	80203851	80203915	80202269	80202707	80206750	80207372	-0.24100	0.00016	excluded	K562	IGF2BP1
SE	CSNK1D	ENSG00000141551.10	chr17	-	80203851	80203915	80202269	80202707	80206750	80207372	0.14300	0.00001	included	HepG2	AKAP1
SE	CSNK1D	ENSG00000141551.10	chr17	-	80207573	80208055	80207306	80207478	80209254	80209290	-0.06700	0.00087	excluded	HepG2	AKAP1
SE	CSNK1D	ENSG00000141551.10	chr17	-	80203851	80203915	80202269	80202707	80206750	80207372	0.31300	0.00004	included	K562	FXR1
SE	CSNK1D	ENSG00000141551.10	chr17	-	80203851	80203915	80202269	80202707	80206750	80207372	-0.27000	0.00000	excluded	K562	PUS1
SE	CSNK1D	ENSG00000141551.10	chr17	-	80203851	80203915	80202269	80202707	80206750	80207372	-0.20900	0.00336	excluded	K562	DDX21

Showing 1 to 10 of 72 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CSNK1D

General Information

Functions

Localization

Domains (AlphaFold: CSNK1D)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CSNK1D is not avaliable on ENCORE database.

67 proteins are bound to CSNK1D RNA:

eCLIP assay for CSNK1D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CSNK1D is not available on ENCORE database.

76 RBPs can affect the gene expression of CSNK1D :

The Knockdown/knockout RNA-Seq assay for CSNK1D is not available on ENCORE database.

43 RBPs can affect the splicing of CSNK1D :

The Knockdown/knockout RNA-Seq assay for CSNK1D is not avaliable on ENCORE database.