COPS3

General Information

Gene Name : COPS3
Gene ID : ENSG00000141030.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: COPS3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COPS3	ENSG00000141030.12	98.75	93.65	96.20	ENCSR000AEF
HepG2	COPS3	ENSG00000141030.12	51.44	78.57	65.00	ENCSR985KAT
K562	COPS3	ENSG00000141030.12	116.84	114.29	115.56	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COPS3 is not avaliable on ENCORE database.

Proteins bound to RNA

COPS3 RNA is bound by 13 proteins.

CanvasJS.com

eCLIP assay for COPS3 is not avaliable on ENCORE database.

13 proteins are bound to COPS3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	17171198	17171251	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.64559	14.79039	K562	YBX3
chr17	17150361	17150419	-	3'-UTR,CDS,intron-Distal	4.17630	13.30419	K562	YBX3
chr17	17150236	17150300	-	3'-UTR,intron-Distal	6.16867	13.22795	HepG2	SUB1
chr17	17150320	17150361	-	3'-UTR,intron-Distal	4.34041	11.09782	K562	YBX3
chr17	17168276	17168295	-	3'-UTR,5'-UTR,CDS,intron-Distal	5.04716	9.98843	K562	YBX3
chr17	17174263	17174310	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.47688	9.87532	K562	YBX3
chr17	17184484	17184552	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.58042	9.71706	HepG2	DDX3X
chr17	17174087	17174114	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.23181	9.44646	K562	YBX3
chr17	17150793	17150840	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.34460	9.14508	K562	PUM2
chr17	17184490	17184549	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.82081	8.86075	K562	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for COPS3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for COPS3 is not available on ENCORE database.
82 RBPs can affect the levels of COPS3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for COPS3 is not available on ENCORE database.

82 RBPs can affect the gene expression of COPS3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COPS3	ENSG00000141030.8	554.67500	1761.35720	-1.66700	50.16210	47.77420	K562	HNRNPC
COPS3	ENSG00000141030.8	968.50300	2092.15030	-1.11120	37.00010	34.46240	K562	SF3A3
COPS3	ENSG00000141030.8	1497.27070	804.40410	0.89620	23.17370	22.09440	HepG2	SRSF1
COPS3	ENSG00000141030.8	1219.16520	1908.27310	-0.64640	15.85180	14.12670	K562	MTPAP
COPS3	ENSG00000141030.8	733.70130	1170.26190	-0.67360	14.47970	13.01170	HepG2	DAZAP1
COPS3	ENSG00000141030.8	390.43840	737.33320	-0.91720	13.53390	12.57020	HepG2	TIAL1
COPS3	ENSG00000141030.8	783.50580	1518.95330	-0.95510	13.58270	11.40110	K562	TIAL1
COPS3	ENSG00000141030.8	648.86300	1048.59790	-0.69250	12.01870	10.66700	HepG2	HNRNPF
COPS3	ENSG00000141030.8	919.97270	596.89900	0.62400	9.33840	8.34490	HepG2	UTP3
COPS3	ENSG00000141030.8	978.25250	1613.51190	-0.72190	10.16150	8.07920	K562	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 97 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for COPS3 is not available on ENCORE database.

24 RBPs can affect the splicing of COPS3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	COPS3	ENSG00000141030.8	chr17	-	17164913	17165006	17163687	17163788	17165279	17165442	0.21500	0.00000	included	K562	XRCC6
SE	COPS3	ENSG00000141030.8	chr17	-	17174071	17174121	17171198	17171291	17174209	17174322	-0.11400	0.00000	excluded	K562	AQR
SE	COPS3	ENSG00000141030.8	chr17	-	17179348	17179478	17174209	17174322	17184445	17184474	-0.10100	0.00004	excluded	K562	AQR
SE	COPS3	ENSG00000141030.8	chr17	-	17164913	17165006	17163687	17163788	17165279	17165420	0.07300	0.00001	included	K562	GPKOW
SE	COPS3	ENSG00000141030.8	chr17	-	17174071	17174121	17171198	17171291	17174209	17174322	-0.10500	0.00008	excluded	K562	U2AF2
SE	COPS3	ENSG00000141030.8	chr17	-	17164913	17165006	17163687	17163788	17165279	17165442	0.05100	0.00000	included	K562	TARDBP
SE	COPS3	ENSG00000141030.8	chr17	-	17164913	17165006	17163687	17163788	17165279	17165420	0.14700	0.00000	included	HepG2	XRCC6
SE	COPS3	ENSG00000141030.8	chr17	-	17164913	17165006	17163687	17163788	17165279	17165420	0.18800	0.00000	included	HepG2	HNRNPC
SE	COPS3	ENSG00000141030.8	chr17	-	17164913	17165006	17163687	17163788	17165279	17165420	0.50200	0.00000	included	K562	HNRNPC
A3SS	COPS3	ENSG00000141030.8	chr17	-	17171198	17171359	17171198	17171291	17174071	17174121	0.10300	0.00011	longer	K562	SF3B4

Showing 1 to 10 of 57 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

COPS3

General Information

Functions

Localization

Domains (AlphaFold: COPS3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COPS3 is not avaliable on ENCORE database.

13 proteins are bound to COPS3 RNA:

eCLIP assay for COPS3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COPS3 is not available on ENCORE database.

82 RBPs can affect the gene expression of COPS3 :

The Knockdown/knockout RNA-Seq assay for COPS3 is not available on ENCORE database.

24 RBPs can affect the splicing of COPS3 :

The Knockdown/knockout RNA-Seq assay for COPS3 is not avaliable on ENCORE database.