CENPN

General Information

Gene Name : CENPN
Gene ID : ENSG00000166451.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CENPN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CENPN	ENSG00000166451.13	48.22	46.92	47.57	ENCSR000AEF
HepG2	CENPN	ENSG00000166451.13	39.12	79.81	59.47	ENCSR985KAT
K562	CENPN	ENSG00000166451.13	114.42	93.98	104.20	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CENPN is not avaliable on ENCORE database.

Proteins bound to RNA

CENPN RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for CENPN is not avaliable on ENCORE database.

10 proteins are bound to CENPN RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	81053764	81053855	+	CDS	4.37904	21.98784	K562	YBX3
chr16	81047743	81047783	+	CDS	4.96153	18.02530	K562	YBX3
chr16	81045696	81045715	+	CDS	4.31984	16.53321	K562	YBX3
chr16	81050952	81050967	+	3'-UTR,CDS,intron-Distal	5.77035	16.21960	K562	YBX3
chr16	81050935	81050952	+	3'-UTR,CDS,intron-Distal	5.74526	16.21960	K562	YBX3
chr16	81063890	81063989	+	intron-Distal	5.66621	15.50506	K562	LIN28B
chr16	81047740	81047743	+	CDS,intron-Proximal	4.61083	13.37425	K562	YBX3
chr16	81045681	81045696	+	CDS	4.47571	12.61927	K562	YBX3
chr16	81062806	81062893	+	3'-UTR,intron-Distal	5.50557	9.86388	K562	PUM2
chr16	81040877	81040956	+	5'-UTR,intron-Proximal	4.71081	8.69247	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 23 entries

eCLIP assay for CENPN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CENPN is not available on ENCORE database.
117 RBPs can affect the levels of CENPN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CENPN is not available on ENCORE database.

117 RBPs can affect the gene expression of CENPN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CENPN	ENSG00000166451.9	208.14470	918.37510	-2.14150	56.88890	55.37550	HepG2	SRFBP1
CENPN	ENSG00000166451.9	121.21110	462.99860	-1.93350	39.41810	37.97640	HepG2	ZNF622
CENPN	ENSG00000166451.9	150.75550	629.84100	-2.06280	37.57010	35.72720	HepG2	RPLP0
CENPN	ENSG00000166451.9	61.42490	369.09850	-2.58710	31.29030	29.44430	HepG2	EIF2S1
CENPN	ENSG00000166451.9	134.88930	524.41670	-1.95890	30.16390	28.55200	HepG2	BOP1
CENPN	ENSG00000166451.9	157.78800	621.67740	-1.97820	27.68200	25.94860	HepG2	SUPV3L1
CENPN	ENSG00000166451.9	216.60820	574.44160	-1.40710	25.70700	24.00380	HepG2	SRSF7
CENPN	ENSG00000166451.9	141.86200	420.97970	-1.56930	24.25950	22.60240	HepG2	UPF1
CENPN	ENSG00000166451.9	129.17440	481.82150	-1.89920	23.92630	21.93210	HepG2	PRPF8
CENPN	ENSG00000166451.9	157.99340	507.64630	-1.68400	22.63140	20.93810	HepG2	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CENPN is not available on ENCORE database.

11 RBPs can affect the splicing of CENPN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CENPN	ENSG00000166451.9	chr16	+	81056359	81056492			81053704	81053881	81058319	81058383	-0.33000	0.00000	0.00000	excluded	K562	SRSF1
SE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303			81053704	81053881	81058319	81058383	-0.41600	0.00000	0.00000	excluded	K562	PUS1
SE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303			81053704	81053881	81058319	81058383	-0.32600	0.00000	0.00005	excluded	K562	RBM15
SE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303			81053704	81053881	81058319	81058383	-0.34300	0.00000	0.00003	excluded	K562	AGGF1
MXE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303	81056359	81056492	81053704	81053881	81058319	81058383	0.39000	0.00000	0.00000	1included	K562	SRSF1
SE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303			81053704	81053881	81058319	81058383	-0.37800	0.00003	0.00121	excluded	K562	U2AF1
SE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303			81053704	81053881	81058319	81058383	-0.37400	0.00013	0.00355	excluded	K562	U2AF2
MXE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303	81058319	81058383	81053704	81053881	81060130	81060243	-0.31700	0.00014	0.05497	2included	HepG2	CSTF2T
SE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303			81053704	81053881	81058319	81058383	-0.18800	0.00027	0.00395	excluded	K562	AQR
SE	CENPN	ENSG00000166451.9	chr16	+	81056201	81056303			81053704	81053881	81058319	81058383	0.22700	0.00040	0.01903	included	K562	FXR1

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CENPN

General Information

Functions

Localization

Domains (AlphaFold: CENPN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CENPN is not avaliable on ENCORE database.

10 proteins are bound to CENPN RNA:

eCLIP assay for CENPN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CENPN is not available on ENCORE database.

117 RBPs can affect the gene expression of CENPN :

The Knockdown/knockout RNA-Seq assay for CENPN is not available on ENCORE database.

11 RBPs can affect the splicing of CENPN :

The Knockdown/knockout RNA-Seq assay for CENPN is not avaliable on ENCORE database.